Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1101 217 2e-50 seq446 217 2e-50 seq3521 105 1e-16 seq1336 105 1e-16 seq692 105 1e-16 >seq1101 Length=81374 Score = 217 bits (240), Expect = 2e-50 Identities = 376/537 (70%), Gaps = 16/537 (3%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||||||||| || || ||||| ||||||||| ||||||| | Sbjct 7027 TGGCAAATGTAC-AAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTGGT 7085 Query 1455839 CGCCGA---CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | ||| || || |||||| || | ||| | || ||||||||| | ||||| Sbjct 7086 CCACGATCTCAAGG---ACTGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAGCA 7142 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 || || ||||||||| || |||||||||||||| ||| ||| ||||| ||| | Sbjct 7143 TGTGCTTGCCTTTTTT-GCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGAATT 7201 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 ||| || || || ||| | || || || || | || |||||||| ||||| || || | Sbjct 7202 TTAGCAACGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTG 7261 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | || || ||||| || ||| ||||| || || || || || ||||| | | | | Sbjct 7262 AGAATATTCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGGAG 7321 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 |||||||||| || | || ||||| || ||| | || | || | || || ||| | | Sbjct 7322 AGAAGGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATT 7381 Query 1456136 GGGCGATGAAGTGG-ATCAACAAGGAG-GGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||| | |||||| | | | ||| | | ||| | || ||||| || | | Sbjct 7382 GGGCACTCAAGTGGTGTGACCCGCGAGTGTCATCG----TACGCAGAGCGTCTATTGGCG 7437 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||| | || |||||||| || ||||| || |||||| ||||||||||||| ||| Sbjct 7438 TTTGCCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAG 7497 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || || || || ||||| |||| || |||| ||||| | || ||||| || || Sbjct 7498 AAACGTGGTCTTATGCCTGGTC-TCAGCTTCTCAAACGAGCTAATTAGTCGTGATGA 7553 >seq446 Length=286769 Score = 217 bits (240), Expect = 2e-50 Identities = 376/537 (70%), Gaps = 16/537 (3%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||||||||| || || ||||| ||||||||| ||||||| | Sbjct 150457 TGGCAAATGTAC-AAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTGGT 150515 Query 1455839 CGCCGA---CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | ||| || || |||||| || | ||| | || ||||||||| | ||||| Sbjct 150516 CCACGATCTCAAGG---ACTGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAGCA 150572 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 || || ||||||||| || |||||||||||||| ||| ||| ||||| ||| | Sbjct 150573 TGTGCTTGCCTTTTTT-GCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGAATT 150631 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 ||| || || || ||| | || || || || | || |||||||| ||||| || || | Sbjct 150632 TTAGCAAYGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTG 150691 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | || || ||||| || ||| ||||| || || || || || ||||| | | | | Sbjct 150692 AGAATATTCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGGAG 150751 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 |||||||||| || | || ||||| || ||| | || | || | || || ||| | | Sbjct 150752 AGAAGGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATT 150811 Query 1456136 GGGCGATGAAGTGG-ATCAACAAGGAG-GGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||| | |||||| | | | ||| | | ||| | || ||||| || | | Sbjct 150812 GGGCACTCAAGTGGTGTGACCCGCGAGTGTCATCG----TACGCAGAGCGTCTATTGGCG 150867 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||| | || |||||||| || ||||| || |||||| ||||||||||||| ||| Sbjct 150868 TTTGCCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAG 150927 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || || || || ||||| |||| || |||| ||||| | || ||||| || || Sbjct 150928 AAACGTGGTCTTATGCCTGGTC-TCAGCTTCTCAAACGAGCTAATTAGTCGTGATGA 150983 >seq3521 Length=28403 Score = 105 bits (116), Expect = 1e-16 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 |||||||||||||||||| ||| |||||||||| | || ||||||| | |||||||| Sbjct 15329 CATGTCGATCATGAACTCATTTATCAACGACATTTTTGAGCGCATCGCATCGGAGGCCGG 15388 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || |||||| ||||||| ||| | || |||||| ||||||| || || Sbjct 15389 CAAGTTGTCGCGCTACAACAAGAAGTCGACGCTGTCCAGCCGCGAGGTCCAGACGGCTGT 15448 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || ||| || || ||||| | ||||||||| || || ||||| Sbjct 15449 GCGTCTCATGCTGCCGGGTGAGCTGGCAAAGCACGCCGTGTCAGAAGGCAC 15499 >seq1336 Length=72523 Score = 105 bits (116), Expect = 1e-16 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| || ||||||||||| |||||||||||| || || || Sbjct 27593 TCGTACTCGACCTACATTTACAAGGTGCTGCGTCAGGTGCACCCCGACAC-----GGGCA 27647 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | | | | | ||||||||||||||||| || | || || | |||| |||||| Sbjct 27648 TTAGCAAGCGTGGT-ATGTCGATCATGAACTCTTTCATTAATGATGTCTTCGAGCGCATC 27706 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| ||| ||| | |||| |||||| ||| | || |||||| Sbjct 27707 GCTTCAGAGGCTGGTAAGCTGTCACGCTACAACAAAAAGTCGACGCTGTCCAGTCGCGAG 27766 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || |||||||| || ||| || || ||||||| ||||||||| || ||| Sbjct 27767 ATCCAGACGGCAGTGCGCCTCATGTTGCCTGGTGAGCTGGCCAAGCACGCCGTGTCGGAG 27826 Query 725136 GGCAC 725140 || || Sbjct 27827 GGTAC 27831 >seq692 Length=3165 Score = 105 bits (116), Expect = 1e-16 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| || ||||||||||| |||||||||||| || || || Sbjct 3090 TCGTACTCGACCTACATTTACAAGGTGCTGCGTCAGGTGCACCCCGACAC-----GGGCA 3036 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | | | | | ||||||||||||||||| || | || || | |||| |||||| Sbjct 3035 TTAGCAAGCGTGGT-ATGTCGATCATGAACTCTTTCATTAATGATGTCTTCGAGCGCATC 2977 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| ||| ||| | |||| |||||| ||| | || |||||| Sbjct 2976 GCTTCAGAGGCTGGTAAGCTGTCACGCTACAACAAAAAGTCGACGCTGTCCAGTCGCGAG 2917 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || |||||||| || ||| || || ||||||| ||||||||| || ||| Sbjct 2916 ATCCAGACGGCAGTGCGCCTCATGTTGCCTGGTGAGCTGGCCAAGCACGCCGTGTCGGAG 2857 Query 725136 GGCAC 725140 || || Sbjct 2856 GGTAC 2852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177423945870430