Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3828 185 1e-41 >seq3828 Length=141882 Score = 185 bits (204), Expect = 1e-41 Identities = 965/1531 (63%), Gaps = 25/1531 (2%) Strand=Plus/Plus Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 || || |||| | ||| | ||| |||| || || || ||||| || | || || Sbjct 94318 AACTCACCAGCAAGCACACGTCGATTGTACATGTTCGACGTGTATGGCTCGATGGACTCG 94377 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 || || || || || || ||||| || ||||| ||||| || ||||| | ||| || Sbjct 94378 TTGTTACCAAGGATCTGGGCAGTCGAAGCAGTAGGCATGGGAGCCACTAGCAAAGAGTTG 94437 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATG-- 68899 | | ||| || | || | || | ||| ||| ||| ||||||||| |||| | Sbjct 94438 CGGATACCGTGCTTAATCACATTCTTTTTCAGAGCGACCCAGTCCCAAAGACCAGAGGAC 94497 Query 68900 -GTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 | | ||| ||| | || | || | || || || || || || || | | || Sbjct 94498 GGAATGACACCCCACATGTCAAACTGGAAGATACCCTTGCTAGCCGGGGAGCCCTGAAAT 94557 Query 68959 GTTTCATAAGGTCCTTCCTGTTCA---GCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 ||||| || || || | |||| || | || || ||| | | | | ||| Sbjct 94558 GTTTCGTACGGGCC---CAGTTCCTTGGCAATCTCCATGGATGTCTCCATCGAAGCATAA 94614 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || || ||||| ||||| || || || | || | | || || || | ||| Sbjct 94615 TAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCGTAA 94674 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | |||||| |||||||| |||| |||||||| |||||||| | ||| | || | | Sbjct 94675 TTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGC 94734 Query 69136 TTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 |||| || ||| ||| |||| || || || || || | || |||| || |||||| Sbjct 94735 ATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTAAGA 94794 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA 69255 || ||| || || || ||| || | || || | ||||| || | | | Sbjct 94795 TTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTTTCA 94854 Query 69256 ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA 69315 ||||| | || || ||||| || | || || || || || ||||| | | | Sbjct 94855 ACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGACGTA 94914 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 || | || | ||| || | ||||| || ||| || || ||||| ||||| || Sbjct 94915 TACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTG 94974 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 ||| |||| |||||||| |||| |||||||| || || |||||||| | Sbjct 94975 GACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGCGCA 95034 Query 69436 TC---GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA-CGCTTC-- 69489 || ||| || | ||| | | ||||| ||| || ||| | | | || Sbjct 95035 TCTAAGATGCTAAA---CCATAGCTGCTGTGCATTAATT---GTTTTGCGAGCACGTCCT 95088 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || ||| || | | | | ||| ||||| || |||||||| || | | || Sbjct 95089 TCCCGTTCGTACTTTTCAAAAAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGAGCA 95148 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 || ||| |||||||| | || |||| ||| | | || ||||||||||| Sbjct 95149 GGTGCTTCGTTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATAAAC 95208 Query 69610 AGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||| |||| |||||| || || || || || | | || | | ||||| || Sbjct 95209 AAATCAGGAACCCAAAGGGCGTAGAATAAG-TCACGCGCTCGGTGTAGCTCATTACCGTG 95267 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || ||| || |||||||| | | || | |||||| || || | |||| || Sbjct 95268 GTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACAGC 95327 Query 69729 CATGACTCCCGGT-CGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | ||| | |||||| ||| || || || | ||||| ||| |||| ||| | | Sbjct 95328 AAA-AGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAACA 95386 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 | | || ||| ||||| || || ||||| ||||| || ||| ||||||||| Sbjct 95387 CACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTAG 95446 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | || || || || ||| | || ||||| || ||| || || || |||| Sbjct 95447 TGGCTCGTATGTTGTGCATACTGATGCCAATTCCACCCGCCCACTTGGAAATGCATGCAC 95506 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | |||||||||||||||| ||||| || || |||||| ||| || | ||| | Sbjct 95507 ATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAARC 95566 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 | |||| ||| || | |||||| |||||||| || || || | || || || | Sbjct 95567 ACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCGTAA 95626 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAA 70087 | | || | ||| | || | ||| || || | ||| | || |||| | || || | Sbjct 95627 AAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTGTGGA 95686 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147 | |||| ||| || ||||| | | || || || || || || |||| ||| | Sbjct 95687 TACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCGCTCCACGACTTTACCATTAACAC 95746 Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 || || ||| ||| || || ||||| ||||| ||||| | || |||||| | | Sbjct 95747 GAAAAAGATATCCTTTCTCGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCCCGGT 95806 Query 70208 CGTAAATAATAACAGAATTTAGTTTATCCTT 70238 ||| ||||| ||||||| || | ||| || Sbjct 95807 CGTRRATAATTGCAGAATTAAGCTCATCTTT 95837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686874325764600