Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1101 145 6e-30 seq446 145 6e-30 seq1113 111 1e-19 >seq1101 Length=81374 Score = 145 bits (160), Expect = 6e-30 Identities = 297/431 (69%), Gaps = 9/431 (2%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || |||||||| || ||||| || || || || ||||| | | | | ||| |||| Sbjct 7150 GCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCA-TGAATTTTAGCAA 7208 Query 43916 -GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||| ||| |||| ||||| || || || || |||||||| ||||| || || ||||| Sbjct 7209 CGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGAGAATAT 7268 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||| ||||| | || || || || ||||| || ||||| ||| |||||| | Sbjct 7269 TCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGGAGAGAAGGA 7328 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093 | || | ||| || || || |||| || | | ||| | ||||| | ||||| | Sbjct 7329 CCATCTGCTGCGTGCCATTGATACGATACCATGTG-TCAAAAAGAAAGCCAATTGGGCAC 7387 Query 44094 TTAAATGGATAAATTCA--AATGAT-TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | || ||| | | | || || | | ||| || || | |||||||| | Sbjct 7388 TCAAGTGGTGTGACCCGCGAGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGG 7447 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 |||| ||||||||||| || ||||| || ||| |||| |||||| | |||||||| ||| Sbjct 7448 TGGAGGGCATTTTCTTCTCCGGATCCTTCTGC-TCCATCTTTTGGCTGAAGAAACGTGGT 7506 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 | |||||||| | | || ||||| ||| |||| ||||||||||| ||| | || Sbjct 7507 CTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACG 7566 Query 44270 GATTTTGCTTG 44280 || |||||||| Sbjct 7567 GACTTTGCTTG 7577 >seq446 Length=286769 Score = 145 bits (160), Expect = 6e-30 Identities = 297/431 (69%), Gaps = 9/431 (2%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || |||||||| || ||||| || || || || ||||| | | | | ||| |||| Sbjct 150580 GCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCA-TGAATTTTAGCAA 150638 Query 43916 -GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||| ||| |||| ||||| || || || || |||||||| ||||| || || ||||| Sbjct 150639 YGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGAGAATAT 150698 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||| ||||| | || || || || ||||| || ||||| ||| |||||| | Sbjct 150699 TCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGGAGAGAAGGA 150758 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093 | || | ||| || || || |||| || | | ||| | ||||| | ||||| | Sbjct 150759 CCATCTGCTGCGTGCCATTGATACGATACCATGTG-TCAAAAAGAAAGCCAATTGGGCAC 150817 Query 44094 TTAAATGGATAAATTCA--AATGAT-TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | || ||| | | | || || | | ||| || || | |||||||| | Sbjct 150818 TCAAGTGGTGTGACCCGCGAGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGG 150877 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 |||| ||||||||||| || ||||| || ||| |||| |||||| | |||||||| ||| Sbjct 150878 TGGAGGGCATTTTCTTCTCCGGATCCTTCTGC-TCCATCTTTTGGCTGAAGAAACGTGGT 150936 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 | |||||||| | | || ||||| ||| |||| ||||||||||| ||| | || Sbjct 150937 CTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACG 150996 Query 44270 GATTTTGCTTG 44280 || |||||||| Sbjct 150997 GACTTTGCTTG 151007 >seq1113 Length=254142 Score = 111 bits (122), Expect = 1e-19 Identities = 220/322 (68%), Gaps = 8/322 (2%) Strand=Plus/Minus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC- 40924 || |||||||| || |||||||| ||||| | ||| |||||||| || || || ||| Sbjct 13388 GGAGATCTTGGACCGGTTTATGGTTTTCAATGGCGCCATTTTGGTGCCAAGTA---CACG 13332 Query 40925 --TATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGTTATAGATAC 40981 |||| || | || |||| | |||| |||| || || | | | || || ||| Sbjct 13331 GATATGCACGCCGACTATAGCGGCCAAGGCGTGGACCAGCTTGCCGAG-GTGATCCATAA 13273 Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 | | | ||||| || ||| || || | ||| || ||||| || | || | Sbjct 13272 GCTCCGCACGAATCCCAATGACCGCCGAATTGTGCTGTCAGCTTGGAATCCGGCTGATCT 13213 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 || ||||||||||| || || || |||| |||||||||||||| ||| ||| Sbjct 13212 GAATGAAATGGCATTGCCTCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGATGA 13153 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 |||||| || || |||| ||| | || | || || |||||||| || |||||||| || Sbjct 13152 ACTGTCGTGCCAGATGTACCAACGCTCGGCCGATATTGGACTAGGCGTGCCGTTTAATAT 13093 Query 41162 AGCGAGTTATGCTCTGCTCACG 41183 || || ||||| |||| ||| Sbjct 13092 TGCCAGCTATGCGTTGCTGACG 13071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397436551360075