Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1101 136 5e-27 seq446 136 5e-27 >seq1101 Length=81374 Score = 136 bits (150), Expect = 5e-27 Identities = 172/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| | |||||||| || ||| || || |||||||||| ||||| Sbjct 7574 GCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCA 7515 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| || ||||||| |||| | || | |||||| || ||||||||||| || Sbjct 7514 GGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATG 7455 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837 |||||||| | |||||||| || || || || ||| | || || ||| | ||| | Sbjct 7454 CCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA-TGACACTCGCGGGTCACA 7396 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| || | |||||| || || ||||| | | |||||||| || | ||||| Sbjct 7395 CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGC 7342 >seq446 Length=286769 Score = 136 bits (150), Expect = 5e-27 Identities = 172/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| | |||||||| || ||| || || |||||||||| ||||| Sbjct 151004 GCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCA 150945 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| || ||||||| |||| | || | |||||| || ||||||||||| || Sbjct 150944 GGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATG 150885 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837 |||||||| | |||||||| || || || || ||| | || || ||| | ||| | Sbjct 150884 CCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA-TGACACTCGCGGGTCACA 150826 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| || | |||||| || || ||||| | | |||||||| || | ||||| Sbjct 150825 CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGC 150772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628000480644000