Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1224 98.7 1e-15 seq413 98.7 1e-15 >seq1224 Length=252807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 179919 GAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACC 179978 ||| ||| |||| || ||||| || ||||| | || ||||||||||| || ||||| Sbjct 48083 GAGCTGCACCACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACC 48024 Query 179979 GTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 180038 ||| |||||||| || || || | ||||| || ||||| || | ||| || |||||||| Sbjct 48023 GTACTGATCACGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACC 47964 Query 180039 CTCCGTCACGATGAGCG 180055 || |||| ||| |||| Sbjct 47963 TTCGGTCAGGATAAGCG 47947 >seq413 Length=106048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 179919 GAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACC 179978 ||| ||| |||| || ||||| || ||||| | || ||||||||||| || ||||| Sbjct 87154 GAGCTGCACCACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACC 87095 Query 179979 GTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 180038 ||| |||||||| || || || | ||||| || ||||| || | ||| || |||||||| Sbjct 87094 GTACTGATCACGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACC 87035 Query 180039 CTCCGTCACGATGAGCG 180055 || |||| ||| |||| Sbjct 87034 TTCGGTCAGGATAAGCG 87018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618404162283400