Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1224 96.9 4e-15 seq413 96.9 4e-15 seq3740 82.4 9e-11 >seq1224 Length=252807 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 169322 ACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCA 169381 ||||| ||||| || |||||| | || ||||| ||||| ||||||||||| |||||| Sbjct 48073 ACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACCGTACTGATCA 48014 Query 169382 CGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACG 169441 || || || || | ||||| || ||||| || | ||| || || ||||| ||||| | | Sbjct 48013 CGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACCTTCGGTCAGG 47954 Query 169442 ATGAGCGTACATT 169454 || |||| |||| Sbjct 47953 ATAAGCGAGCATT 47941 >seq413 Length=106048 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 169322 ACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCA 169381 ||||| ||||| || |||||| | || ||||| ||||| ||||||||||| |||||| Sbjct 87144 ACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACCGTACTGATCA 87085 Query 169382 CGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACG 169441 || || || || | ||||| || ||||| || | ||| || || ||||| ||||| | | Sbjct 87084 CGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACCTTCGGTCAGG 87025 Query 169442 ATGAGCGTACATT 169454 || |||| |||| Sbjct 87024 ATAAGCGAGCATT 87012 >seq3740 Length=18772 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 169328 GCATCGCGAACATTCTTACA-CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACC 169386 || |||||||| || | || ||| || || | || |||||||| |||| ||| | || Sbjct 5316 GCTTCGCGAACGTT-TAGCATCTTACCTCGCAATGGAAAGACACCATAGTAATCTCTGCC 5374 Query 169387 AACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAG 169446 |||||| | || || | || || | ||| || || ||||| || ||||| | || || Sbjct 5375 AACGACAGCAAGGCCGCCAACAGCAACAGTTTTGGCGGAGTCGCCTTCGGTTAGAATCAG 5434 Query 169447 CGTACATTTTCCAGATTGT-GCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATAC 169505 || || | | | || | || ||||| || | || ||||||||||||||||| |||| Sbjct 5435 AGTGCAATC-CTTGCTTTTCGCTGTACCAGCGTGATTGGCATCATCCAATTTGGGGATAC 5493 Query 169506 CAGTAA 169511 |||||| Sbjct 5494 CAGTAA 5499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583231527598600