Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3828 105 7e-18 >seq3828 Length=141882 Score = 105 bits (116), Expect = 7e-18 Identities = 265/399 (66%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || |||||| ||| || || ||||| || | | |||||| ||||||||||||| || Sbjct 95263 CCGTGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTAT 95322 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 | || || || || ||||| || || || || |||| ||||| ||||| |||| ||| Sbjct 95323 ACAGCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTA 95382 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGT--CCCGTTGATTCGTG 79621 || || || | ||| || | ||| |||| | | || || || | || || || Sbjct 95383 AACACACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTG 95442 Query 79622 TACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATG 79680 | | || || ||||| | ||| ||| || || || || | ||||||||| ||| Sbjct 95443 T--TAGTGGCTCGTATGTT-GTGCATACTGATGCCAATTCCACCCGCCCACTTGGAAATG 95499 Query 79681 TGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACC 79740 || || | || | || || || || || || ||||| || |||| |||||| | Sbjct 95500 CATGCACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGT 95559 Query 79741 AGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 | || || |||| || || || || || || || | || |||||||| Sbjct 95560 AAAAARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCA 95619 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 ||||| || ||||| || ||||| |||||||||||| Sbjct 95620 TGCGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCC 95658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548497270911600