Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1101 156 5e-33 seq3828 147 2e-30 seq446 132 5e-26 seq413 132 5e-26 seq1224 131 2e-25 >seq1101 Length=81374 Score = 156 bits (172), Expect = 5e-33 Identities = 539/824 (65%), Gaps = 25/824 (3%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||| ||||| || || || |||||||| |||||||||||||| |||| | ||| || | Sbjct 7869 CTTGGAATACTCGCCCACACGCTTTTCGAAAAAGTTGGTCTTGCCTTGTAGCGAAATCAT 7810 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATA--GGCTTCTCCCCAAACTGTGC- 74572 |||||||||||||| |||||||| || ||||| ||| | ||| | || | Sbjct 7809 ATCCATCCAGTCGAATGGGTTCTTGGCGTGATAAATCTTGGCAACACCC---AGTGAGTA 7753 Query 74573 CATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGAT 74632 || | || || ||||| || | ||||||||| ||| | ||| | |||||| || Sbjct 7752 CAGTAAACGGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAAT 7693 Query 74633 GAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACC-TCGCA--AGCCCATTG 74689 ||| | | || |||| || | |||||| ||| | || || | ||| | Sbjct 7692 GAGCTCGACAGGGAGTGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCCC---G 7636 Query 74690 GACAATCTTGTGAAT--GTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAA-GCGT 74746 | ||||| ||| | | || | || |||| | ||| | || || | | | Sbjct 7635 AATAATCTCGTGCACCCGACTCTCC--GGCAACTTATTAACCAGTTTGGAATACATGAGA 7578 Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 || | |||| ||| ||| ||| ||||| | || || | || || || || || Sbjct 7577 CAAG-CAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAG 7519 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 ||||||||||| ||||| ||||||| ||||||||||| |||||||| || |||||| Sbjct 7518 ACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAA 7459 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-CA-TCGGAAGTC 74924 ||||| || || | ||||| || | || || | ||| ||| || || ||| ||| Sbjct 7458 AATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGTC 7399 Query 74925 A-TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 | ||| | | ||||| | ||||| |||||| || | ||||| || || | Sbjct 7398 ACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACG 7339 Query 74984 --GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 | ||| | | |||||||| | | || ||||| | ||||| | || || || Sbjct 7338 CAGCAGATGGT--CCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAG 7281 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 |||||| ||||| ||| | ||| || ||||||| | || || || | Sbjct 7280 ACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGT 7221 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 | || || || || |||||||||| ||| || || | || ||||| || ||| Sbjct 7220 ACTTGCACTTCGTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCT 7161 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || ||||| || || || || | || ||||| |||| ||| |||||||||||||| Sbjct 7160 GCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAG 7101 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||||| || || ||| || | ||||||| | |||||||| Sbjct 7100 TCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAA 7057 >seq3828 Length=141882 Score = 147 bits (162), Expect = 2e-30 Identities = 304/447 (68%), Gaps = 6/447 (1%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA--CACGCGTGTCCGTGAGACGTACG 53252 |||||||| || || ||||||||| || | || || ||| | | |||||||||| Sbjct 95705 ATGCGCGTTGCGTTAGGTATCCACAA-GAGCAATATCCAAGCGGCTTTG-GAGACGTACG 95648 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 | || ||| || |||| |||||||| || |||||||| |||| || ||||| || Sbjct 95647 AGTTGATGTCTCAGAAGTTTTTTACGCATGCGACGCCAACGTTGTTTAATGCTGGAACTC 95588 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || || |||| || || | | || ||| ||||||| ||||| || || | Sbjct 95587 CTCGTCCCCAACTGTCCTCGTGYTTTTTACTAGCTATGCAGGATGATTCGATTGAAGGTA 95528 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | || || || | || | ||||| ||| ||||||||| ||||||| || || ||| Sbjct 95527 TTTATGACACATTGAAACAATGTGCATGCATTTCCAAGTGGGCGGGTGGAATTGGCATCA 95468 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 ||| | ||| | || || | || || || || || || | | | Sbjct 95467 GTATGCAC-AACATACGAGCCACTAACAGTTATATTCGTGGCACTAATGGGTCCTCTAAC 95409 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||| | |||||| | || || || ||| |||| ||||| ||||| |||| ||||| Sbjct 95408 GGGATCATTCCTATGTTGCGTGTGTTTAACGACACAGCCCGATACGTGGACCAAGGTGGA 95349 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 || || ||||| ||||| || || | ||| | ||||||||||| |||||| | | ||| Sbjct 95348 GGTAAACGCAAAGGGTCTTTTGCTGTATACTTGGAGCCGTGGCATGCCGACGTGTTTGAG 95289 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGT 53638 ||||| || || ||| ||| || ||| Sbjct 95288 TTTCTGGACCTTCGTAAGAACCACGGT 95262 >seq446 Length=286769 Score = 132 bits (146), Expect = 5e-26 Identities = 345/520 (66%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| ||| ||| ||| ||||| | || || | || || || || || ||| Sbjct 151004 GCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCA 150945 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 |||||||| ||||| ||||||| ||||||||||| |||||||| || |||||| ||| Sbjct 150944 GGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATG 150885 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-CA-TCGGAAGTCA-TC 74927 || || || | ||||| || | || || | ||| ||| || || ||| |||| | Sbjct 150884 CCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGTCACAC 150825 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG--GA 74985 || | | ||||| | ||||| |||||| || | ||||| || || | | Sbjct 150824 CACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAGC 150765 Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045 ||| | | |||||||| | | || ||||| | ||||| | || || || || Sbjct 150764 AGATGGT--CCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAGACCT 150707 Query 75046 CCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105 |||| ||||| ||| | ||| || ||||||| | || || || | | | Sbjct 150706 CCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTT 150647 Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 | || || || |||||||||| ||| || || | || ||||| || ||| || | Sbjct 150646 GCACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAA 150587 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCT 75225 |||| || || || || | || ||||| |||| ||| |||||||||||||| |||| Sbjct 150586 AAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAGTCCT 150527 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | || || ||| || | ||||||| | |||||||| Sbjct 150526 TGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAA 150487 >seq413 Length=106048 Score = 132 bits (146), Expect = 5e-26 Identities = 274/405 (68%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || |||||||||||||| || || | |||||| | ||||| |||||| | Sbjct 88230 CCTGTACCAATACCCTCTGCACCGTTCACGAGCAGCATCGGAATTATAGGAGCGTAATAT 88171 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||| ||| | ||| || || |||| | | | || ||| || | Sbjct 88170 ATGGGCTCGACCGGAAAACCATCGTCGTCGGCGTAACGAAGCAAAGCATCGTCTTCCTCA 88111 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAAC-GCGTGAAGATGTATCGGGAGCTGGCCGC 152054 |||||| ||||| | | || | |||| ||||| ||||| | || || || Sbjct 88110 GGGAATATTAAGCGAGTG-TGTTTTTGAAGCTGCGTAAAGATATATCGAGGACTAGCGGC 88052 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||||||| ||| || ||| |||||||| || || || || | || || ||||| Sbjct 88051 ATCCTTGCCTCCTTGCAACCGAGTTCCAAATTGGCCGGATGGATACAGCAGTGGAAGGTT 87992 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| | || || || | ||| |||| || |||||||| || | |||||||| Sbjct 87991 GTTAGAACCAACAAAGTCCTGGGCCATGTTAACAATCGTAGAATGTAACGAAGCTTCACC 87932 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||||||||| || || ||||| | ||| ||||||| ||||| ||||||| || | Sbjct 87931 GTGGTGATAAGCTGTGTGCTCACTGCAGTAACCCGCCAGTTGCGCGACCTTCACCTCGCT 87872 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGA 152279 ||||| || ||| || |||||| | | |||||| ||||| || Sbjct 87871 AGTCAGCTTGCGCTTCAGGCAGGCGAATAGCACCTTACGCTGCGA 87827 Score = 100 bits (110), Expect = 3e-16 Identities = 270/408 (66%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || |||||||||||||| |||| || | |||||| | | |||| |||| | Sbjct 88230 CCTGTACCAATACCCTCTGCACCGTTCACGAGCAGCATCGGAATTATAGGAGCGTAATAT 88171 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| ||| | | ||| ||||| | |||| |||| |||| ||| | | Sbjct 88170 ATGGGCTCGACCGGAAAACCATCGTCGTCGGCGTAACGAAGCAAAGCATCGTCTTCCTCA 88111 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCT-----AGGCGAGTGAAAATGTAACGAGAGCTTG 117326 |||||| | | | ||| | || | || || || || |||| || | Sbjct 88110 GGGAATAT-----TAAGCGAGTGTGTTTTTGAAGCTGCGTAAAGATATATCGAGGACTAG 88056 Query 117327 CAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 | ||||||||||| || |||| || || || ||||| || || | || || Sbjct 88055 CGGCATCCTTGCCTCCTTGCAA-CCGAGTTCCAAATTGGCCGGATGGATACAGCAGTGGA 87997 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 |||||||| | || ||||||| || |||| ||| ||||||||| || | || Sbjct 87996 AGGTTGTTAGAACCAACAAAGTCCTGGGCCATGTTAACAATCGTAGAATGTAACGAAGCT 87937 Query 117446 TCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504 ||||| |||||||| || || ||||| | || ||| |||||||| || || ||||||| Sbjct 87936 TCACCGTGGTGATAAGCTGTGTGCTCACTGCA-GTAACCCGCCAGTTGCGCGACCTTCAC 87878 Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTG 117552 || ||||| || ||| |||||||| | | |||||| ||||| Sbjct 87877 CTCGCTAGTCAGCTTGCGCTTCAGGCAGGCGAATAGCACCTTACGCTG 87830 >seq1224 Length=252807 Score = 131 bits (144), Expect = 2e-25 Identities = 273/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || |||||||||||||| || || | |||||| | ||||| ||||| | Sbjct 49159 CCTGTACCAATACCCTCTGCACCGTTCACGAGCAGCATCGGAATTATAGGARCGTAATAT 49100 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||| ||| | ||| || || |||| | | | || ||| || | Sbjct 49099 ATGGGCTCGACCGGAAAACCATCGTCGTCGGCGTAACGAAGCAAAGCATCGTCTTCCTCA 49040 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAAC-GCGTGAAGATGTATCGGGAGCTGGCCGC 152054 |||||| ||||| | | || | |||| ||||| ||||| | || || || Sbjct 49039 GGGAATATTAAGCGAGTG-TGTTTTTGAAGCTGCGTAAAGATATATCGAGGACTAGCGGC 48981 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||||||| ||| || ||| |||||||| || || || || | || || ||||| Sbjct 48980 ATCCTTGCCTCCTTGCAACCGAGTTCCAAATTGGCCGGATGGATACAGCAGTGGAAGGTT 48921 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| | || || || | ||| |||| || |||||||| || | |||||||| Sbjct 48920 GTTAGAACCAACAAAGTCCTGGGCCATGTTAACAATCGTAGAATGTAACGAAGCTTCACC 48861 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||||||||| || || ||||| | ||| ||||||| ||||| ||||||| || | Sbjct 48860 GTGGTGATAAGCTGTGTGCTCACTGCAGTAACCCGCCAGTTGCGCGACCTTCACCTCGCT 48801 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGA 152279 ||||| || ||| || |||||| | | |||||| ||||| || Sbjct 48800 AGTCAGCTTGCGCTTCAGGCAGGCGAATAGCACCTTACGCTGCGA 48756 Score = 102 bits (112), Expect = 9e-17 Identities = 270/408 (66%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || |||||||||||||| |||| || | |||||| | | |||| |||| | Sbjct 49159 CCTGTACCAATACCCTCTGCACCGTTCACGAGCAGCATCGGAATTATAGGARCGTAATAT 49100 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| ||| | | ||| ||||| | |||| |||| |||| ||| | | Sbjct 49099 ATGGGCTCGACCGGAAAACCATCGTCGTCGGCGTAACGAAGCAAAGCATCGTCTTCCTCA 49040 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCT-----AGGCGAGTGAAAATGTAACGAGAGCTTG 117326 |||||| | | | ||| | || | || || || || |||| || | Sbjct 49039 GGGAATAT-----TAAGCGAGTGTGTTTTTGAAGCTGCGTAAAGATATATCGAGGACTAG 48985 Query 117327 CAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 | ||||||||||| || |||| || || || ||||| || || | || || Sbjct 48984 CGGCATCCTTGCCTCCTTGCAA-CCGAGTTCCAAATTGGCCGGATGGATACAGCAGTGGA 48926 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 |||||||| | || ||||||| || |||| ||| ||||||||| || | || Sbjct 48925 AGGTTGTTAGAACCAACAAAGTCCTGGGCCATGTTAACAATCGTAGAATGTAACGAAGCT 48866 Query 117446 TCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504 ||||| |||||||| || || ||||| | || ||| |||||||| || || ||||||| Sbjct 48865 TCACCGTGGTGATAAGCTGTGTGCTCACTGCA-GTAACCCGCCAGTTGCGCGACCTTCAC 48807 Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTG 117552 || ||||| || ||| |||||||| | | |||||| ||||| Sbjct 48806 CTCGCTAGTCAGCTTGCGCTTCAGGCAGGCGAATAGCACCTTACGCTG 48759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547188536597000