Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3828 161 1e-34 seq3385 136 5e-27 seq1224 127 2e-24 seq413 127 2e-24 seq3939 113 5e-20 >seq3828 Length=141882 Score = 161 bits (178), Expect = 1e-34 Identities = 647/1006 (64%), Gaps = 25/1006 (2%) Strand=Plus/Plus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| |||||||| |||||||| || ||||||||||| | || | |||||| || || Sbjct 94000 CGCATGTAGTACATACCCGTCTTTAGCCCCTTCTTCCAAGCATAAAAGTGCATGGATGTG 94059 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 || || | || |||| | ||| ||||| || |||||| ||| ||||| || Sbjct 94060 AGTTTACTGATCGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAGATATAA 94119 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || ||||| || |||| || || | | || || || |||||||| ||||| Sbjct 94120 GCACCACGGTCAGCCGACAGATCTAACACGGATTTCTGCTTGATTTCCCACACTGTCTTG 94179 Query 80221 TACACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACCGTCCTTT 80277 ||| || | | || |||||| | || ||||||||| ||| ||| || Sbjct 94180 TACTTCTCYTTGACATGGTCCGGAATGCTTTTCACCTTTTGCACAGARCCATGGTCGTTC 94239 Query 80278 ACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 | || || || | || | |||||||| ||| || | | ||| ||||||| ||| Sbjct 94240 AGTATCTGGTTACGGACCTCGGGCGTCCAGATACCCAGATCGATCAGCTCTTTCATCAGG 94299 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | |||||| | || ||||| || || || || || |||| ||| | ||| Sbjct 94300 TACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGATTGTACATGTTCGACGTG 94359 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 || ||||| | | ||||||||| || |||||||| || || || || ||||| || Sbjct 94360 TATGGCTCGATGGACTCGTTGTTACCAAGGATCTGGGCAGTCGAAGCAGTAGGCATGGGA 94419 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | || | || || || || | |||||||| | | || || || | | |||| | Sbjct 94420 GCCACTAGCAAAGAGTTGCGGATACCGTGCTTAATCACATTCTTTTTCAGAGC-GACCCA 94478 Query 80518 AAATC-AACCCCA----ACG--CTGTGACCCCACATGTCGTGCTGCAAGATGCCCTCCGA 80570 | || ||| ||| || |||||||||||| ||| ||||| |||| Sbjct 94479 GTCCCAAAGACCAGAGGACGGAATGACACCCCACATGTCAAACTGGAAGATACCCTTGCT 94538 Query 80571 CGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTC---ACACGA 80627 ||||| || ||| || || |||||||||||| |||||| | ||| | | Sbjct 94539 AGCCGGGGAGCCCTGAAATGTTTCGTACGGGCCCAGTTCCTTGGCAATCTCCATGGATGT 94598 Query 80628 CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTG 80687 |||||| | || | ||| ||| |||||| | |||||||| | || ||||| Sbjct 94599 CTCCAT---CGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTG 94655 Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747 | | || |||| | ||| | ||||| | || ||||| |||||||| || || Sbjct 94656 TTCGCTTTCAAACGCGTAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAAT 94715 Query 80748 GGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTAT 80806 | | |||||||||||| | || || || | | ||||| | || ||||| |||| Sbjct 94716 ACCCACAGGGCGGTGGCGCATATTAGA-CGTTTGAGCCTCTGCAACCGGGTAGTAGTTGA 94774 Query 80807 TATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAA 80866 ||||| || ||| || || || || || ||| || ||||||| || |||| Sbjct 94775 CGTCGATAACCTTGTTAAGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGT 94834 Query 80867 AGTCGAATTGGTTCCCCTT--CACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACAC 80924 |||| || || || || |||||| || || || ||||||| |||||||| Sbjct 94835 AGTCAAA--GGCACCGTTTTCAACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACAC 94892 Query 80925 GGCCACCTC-TTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAA 80983 ||||| || ||| || | ||| |||| | | || |||||| ||| || | Sbjct 94893 AGCCACTTCATTCGGCGAC-GTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGA 94951 Query 80984 TTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 | || || || || | |||||| ||||| ||| |||||||| Sbjct 94952 TCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTAACCGCGTCCTT 94997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 81288 CTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTC 81347 ||||| ||| ||||| || | || ||||| || | | ||| |||||||| ||||| Sbjct 95256 CTCATTACCGTGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTC 95315 Query 81348 CAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 || || || || | ||||| ||||| || ||||| |||| ||||| ||||| || Sbjct 95316 CAAGTATACAGCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGT 95375 Query 81405 CGCGTTAAATACACGCAACATAGGGATGATACC 81437 ||||||| |||||||||||||| ||||| || Sbjct 95376 GTCGTTAAACACACGCAACATAGGAATGATCCC 95408 >seq3385 Length=38424 Score = 136 bits (150), Expect = 5e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| ||||| | || |||||||| |||||| | ||||| || || Sbjct 14516 ATCATGCAGATTTTTGTAAAGACTTTGACAGGCAAGACCATTACTTTGGAGGTGGAATCG 14457 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||| | |||| | ||| ||||| ||||||||||| || ||||| || || Sbjct 14456 TCCGACAGCATCGAAAATGTTAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGAG 14397 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||||| || |||||||| ||||| || || |||| ||| |||| | ||||| Sbjct 14396 CAGCAACGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTGCCCTTTCGGACTAC 14337 Query 27583 AATGTCCAAAAGG 27595 ||| | ||||||| Sbjct 14336 AATATTCAAAAGG 14324 >seq1224 Length=252807 Score = 127 bits (140), Expect = 2e-24 Identities = 190/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || || || ||| ||| ||||| |||||| ||| ||||||||| ||| || ||| | Sbjct 48741 GATGGGCTTAAGATTTCGCAGCGTAAGGTGCTATTCGCCTGCCTGAAGCGCAAGCTGACT 48800 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAG--AGCAAACGGCCTATCACC 32101 || || ||||||| ||||| ||| |||| ||| |||| |||| || || ||||||| Sbjct 48801 AGCGAGGTGAAGGTCGCGCAACTGGCGGGTTACT--GCAGTGAGCACACAGCTTATCACC 48858 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| || || ||| | || || ||||| ||| | || ||| ||||||| ||| | | Sbjct 48859 ACGGTGAAGCTTCGTTACATTCTACGATTGTTAACATGGCCCAGGACTTTGTTGGTTCTA 48918 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||||| | || | ||||| || || ||||| || ||| | || ||||||| Sbjct 48919 ACAACCTTCCACTGCTGTATCCATCCGGCCAATTTGGAACTCGGTTGCAAGGAGGCAAGG 48978 Query 32222 ATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||| || || | || || ||||| || Sbjct 48979 ATGCCGCTAGTCCTCGATATATCTTTAC 49006 >seq413 Length=106048 Score = 127 bits (140), Expect = 2e-24 Identities = 190/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || || || ||| ||| ||||| |||||| ||| ||||||||| ||| || ||| | Sbjct 87812 GATGGGCTTAAGATTTCGCAGCGTAAGGTGCTATTCGCCTGCCTGAAGCGCAAGCTGACT 87871 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAG--AGCAAACGGCCTATCACC 32101 || || ||||||| ||||| ||| |||| ||| |||| |||| || || ||||||| Sbjct 87872 AGCGAGGTGAAGGTCGCGCAACTGGCGGGTTACT--GCAGTGAGCACACAGCTTATCACC 87929 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| || || ||| | || || ||||| ||| | || ||| ||||||| ||| | | Sbjct 87930 ACGGTGAAGCTTCGTTACATTCTACGATTGTTAACATGGCCCAGGACTTTGTTGGTTCTA 87989 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||||| | || | ||||| || || ||||| || ||| | || ||||||| Sbjct 87990 ACAACCTTCCACTGCTGTATCCATCCGGCCAATTTGGAACTCGGTTGCAAGGAGGCAAGG 88049 Query 32222 ATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||| || || | || || ||||| || Sbjct 88050 ATGCCGCTAGTCCTCGATATATCTTTAC 88077 >seq3939 Length=136313 Score = 113 bits (124), Expect = 5e-20 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| || |||||||| ||||| || |||||||| ||||| || ||||||| ||| Sbjct 72272 GGAATTCCYCCTGACCAGCAACGTCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGT 72331 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | || || || || |||||||||| || ||| | || ||||| |||||||||| Sbjct 72332 ACTTTGGCGGATTACAACATCCAAAAGGAGTCGACTTTGCACCTAGTGYTGCGTCTTCGT 72391 Query 27628 GGTGG 27632 ||||| Sbjct 72392 GGTGG 72396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570281777546800