Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq2439 722 0.0 seq1576 365 2e-96 seq1963 196 2e-45 seq1512 154 6e-33 >seq2439 Length=1004 Score = 722 bits (800), Expect = 0.0 Identities = 767/1005 (76%), Gaps = 11/1005 (1%) Strand=Plus/Plus Query 24033 CGCGGCTCCTGGCCACCCTTCCCATCCGGCACCAACTGGTCGCAGTACTGGGAAATCCGG 24092 ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 4 CGCGGCTCCTGGCCACCCTTCCCGTCCGGCACCAACTGGTCGCAGTATTGCGAAATCCGG 63 Query 24093 TACATCTCCCAGCGATCGACCATCCAAGCCTTGATGCGTTTACCCACACCGAAGCGATC- 24151 |||| |||||| || |||||||| | ||||||||| |||| || ||||| || Sbjct 64 TACAGCTCCCATTTGTCCACCATCCACGGCTTGATGCGACGGCCCAGGCCAAAGCGGTCA 123 Query 24152 --GTTGGTCACGATGTCGTAGGTGTGCCAGACCGGGTTGTCGGTCCAGGCCTGTTTCATC 24209 | |||| | |||||||||| |||||| |||||||||||||||||||| || | Sbjct 124 GCGATGGTAA---TGTCGTAGGTCATCCAGACAGGGTTGTCGGTCCAGGCCTGCTTAAAG 180 Query 24210 GTGCCGTCCCAGATGCCGAGGTAGGCCCGGGTCTCCGGATCGTAATTGCTCGGCACTTGG 24269 ||||||||||| | ||| ||| | || | | | || ||||| ||||||||||| || Sbjct 181 GTGCCGTCCCAAACGCCACTGTACGAGCGCGACACAGGGTCGTAGTTGCTCGGCACCTGC 240 Query 24270 ACCTTCCGCCCGCGGCAGTCGACTGTGACAGCCGGAATGTTGCTGAACTGCTCTGCGCTG 24329 | |||| | | || || || || ||||| || ||| ||||||||| ||| Sbjct 241 ATCTTCTTCAATTTGGTCTCAACCGTTACGGCCGGGATACTGCGGAACTGCTCGGCGGAA 300 Query 24330 AACTCGACGTACAGCAGGGCCGTGTTCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTG 24389 ||||||| ||| ||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct 301 AACTCGATGTAGAGCAGCGCCGTGTTCGGGTAGCGGATCTTCGCGTCGATCACCTCGGTA 360 Query 24390 TAGCCGGCGATCAGCATGGTGTCGGCGATGCGGTTGTTGTTCTGGTTCGGCGTCAGGCGG 24449 | ||||||||| |||||||||| | ||| ||||||||||||||| || || | |||| Sbjct 361 AATCCGGCGATCTGCATGGTGTCCGAGATTTTGTTGTTGTTCTGGTTTGGTGTGATGCGG 420 Query 24450 CGGACGCGCACCTGCCAGCCATTGGTGGCCGCCGGCAGGTCGATCCGGCGGGAACGCTCG 24509 || ||||| | |||||| | ||||| || | ||||| ||||| | |||||| Sbjct 421 GTGATGCGCATCAACCAGCCGGTCGTGGCTTTGGGTAAATCGATACGGCGCGTGCGCTCG 480 Query 24510 TAGCGGGTGGTGGTCTTGCCATCGACGGCCTCGCGCAGCACCTCCTGATAGGCGCCGCCG 24569 || | ||||||||||||| ||||| ||||||| || |||| ||||||||| || || Sbjct 481 TACACGCTGGTGGTCTTGCCGTCGACAGCCTCGCTCAAAACCTGCTGATAGGCACCACCA 540 Query 24570 TCGGTGGCCAGATCTACGGCATATTCGATCCGGTACCCGCCGATGTTGCCGTTGGTGTCC 24629 ||| ||||||| || || |||||||||||||||||| |||||||||| || ||| Sbjct 541 TCGCTGGCCAGCTCAACCTTGTATTCGATCCGGTACCCGTTGATGTTGCCGCCGGCATCC 600 Query 24630 TGCTGCTGGAGCGCTGGCCAGGCGAAGCGCAGGCGCACTGCGGAAAGCTGGGTATTGCTC 24689 ||| ||||| |||||||| || |||| |||||| |||||||| || |||||| | Sbjct 601 ACAGACTGAAGCGCCGGCCAGGCAAAACGCACGCGCACAGCGGAAAGTTGAGTATTGTTG 660 Query 24690 AGCGAGCGCACCCAGGGCGTATCGCTGCGCAACTCGACGTTGACGCTGGTTTCGTTCTCA 24749 | || | ||||| || || ||||||||| |||| | ||| |||| |||||||| Sbjct 661 ATCGCCCTAACCCACGGGGTGCCGCTGCGCAGCTCGGTGCTGATTGTGGTCTCGTTCTCG 720 Query 24750 ACGGCAGGGATGCCCGGGATGTAGTCCTGGTCCACCGCCCCCGCGCGCCACTCCCACTTA 24809 || | ||||| ||| |||| ||| ||||||||| ||||| | ||||||||||||||| Sbjct 721 ACCGACGGGATCCCCTGGATATAGGTCTGGTCCACGGCCCCGGTGCGCCACTCCCACTTC 780 Query 24810 ACGTTTGGGAAGTTCAGGTTACCGCTCGGGTCCATCAGCGGGGTGTTGTCGAGGTAGATG 24869 |||||||||||||||| ||| || ||||| |||||| |||||||||||||||||| Sbjct 781 ACGTTTGGGAAGTTCATGTTGCCCTGGGGGTCTTGCAGCGGAGTGTTGTCGAGGTAGATG 840 Query 24870 TCGCGCTCGCTCGGAACGCCGGCGAACTCGCCCTCGCCCACGGCAAGCAGGATCTTGGCC 24929 || | || |||| ||| | |||||||||||||||||||||| ||| || ||||| Sbjct 841 TCCCTGGCGGTCGGCGTGCCCTCAAACTCGCCCTCGCCCACGGCAATCAGCATTTTGGCG 900 Query 24930 ATCGCGACCGAGCGCAGGCTGTCGGGTGCCTCGACCGGC-TGTTTCGGTTTGCTACTGCC 24988 | || ||||||||||| ||||| || ||||| |||| | ||| | || || | ||| Sbjct 901 ACGGCAACCGAGCGCAGACTGTCCGGGGCCTCTGTCGGCGTTTTTGGCTTCTCTTC-GCC 959 Query 24989 GCCCTTGCGGCCGGCCAGGT-GCTG--GTGAACTGCGCCCATGCT 25030 ||||||| |||| | || | || | | ||||||||||||| Sbjct 960 GCCCTTGGCGCCGTGGATGTCGATGTTGCGTGCTGCGCCCATGCT 1004 >seq1576 Length=1476 Score = 365 bits (404), Expect = 2e-96 Identities = 450/614 (73%), Gaps = 1/614 (0%) Strand=Plus/Plus Query 45869 CTGCACGATGAAGGCTTTCACCTCATTGTTCAGGACTGCCATATGGGCTCACTCCGTCTT 45928 ||| || |||||| |||||||||||||||||||| |||||||| ||| | |||||||| Sbjct 1 CTGAACCATGAAGCCTTTCACCTCATTGTTCAGGGCTGCCATA-GGGTAAATTCCGTCTT 59 Query 45929 AGCTCTGTCATGGATCAGGCCGACTTGAGCAGACAGGTTCCGCAGGCCCTCGCGATGTTG 45988 || ||||||| || ||||||| | ||||||||||||||||||||||||||| ||||| Sbjct 60 AGGTCTGTCAGGGGTCAGGCCAATCTGAGCAGACAGGTTCCGCAGGCCCTCGATATGTTC 119 Query 45989 ATCTTTGCCACTTCTGGCGGCTTGCTGGCAGCGTCGATCATCTCTTGCACTGCCTCACTG 46048 | || |||| || | || || | ||||| || | || | |||| || | || Sbjct 120 AATTTCCCCACCTCGGCAGGACTGTTTGCAGCATCCACCAACGCTTGAACGTCAGGGCTT 179 Query 46049 GCGCCGTAGCGGCGCACCACCCCGACGAACTCATTCACGTCATGCCCGCGCAAGTAGAGG 46108 || ||||||||||| ||||| || |||||||| | || || || ||||| | || Sbjct 180 GCACCGTAGCGGCGGACCACGCCAACGAACTCCTCGACATCGTGTGAGCGCATCTCAAGC 239 Query 46109 CTCGGCATCCCGTCCGAGCTGAATTTTGGCGCGCCGAACTCGTCTGTCTTCTGGGCTATG 46168 | || || ||| | | ||| |||| ||| ||| || | ||||| ||| Sbjct 240 TTGGGTGCGCCATCCTTGGTAAATGCTGGCTGACCGTACTTATCCATGGCATGGGCGATG 299 Query 46169 TGAAATAGTTCATGCTCCAAAAGCGAGCAAAACTCCACGTCCGAACACTGCGAGCAGTAG 46228 ||| | || |||||||| | || | || || || ||| ||||| | ||||||| Sbjct 300 TGATAGAGCTCATGCTCAACCAGGGCACAGAAGTCGGTGTCGCTGCACTGAGCGCAGTAG 359 Query 46229 TCAGCCGCCAGGGTGATGAGGAAGTCCGGCTCTTCACCAAACCATTCACGCATCTGCTGC 46288 || || || |||||||||| |||| ||||| | || || ||||| |||||||||||||| Sbjct 360 TCCGCAGCTAGGGTGATGATGAAGGCCGGCACGTCGCCGAACCAATCACGCATCTGCTGT 419 Query 46289 TCTTGCCGGGCCTTCTGCCAACCTCCAGCGCGGAACATGACCTGCTCGGCCTGGCCCAGG 46348 || |||||| |||||||| || |||||||||||| || |||||||||||||||||| Sbjct 420 TCCATCCGGGCTTTCTGCCAGCCACCAGCGCGGAACCCCACTTGCTCGGCCTGGCCCAGG 479 Query 46349 ACATAACGGCCTTGCTTGGTGAATCCAGAGGATGCCCAGAGGACGCGGATGTTCGCGTCG 46408 || | || ||||||| ||| | || || ||||| | ||||||||||| ||| || Sbjct 480 ACTGTCCTACCATGCTTGGCGAAGCTCGACGACGCCCACATGACGCGGATGTCCGCATCC 539 Query 46409 ATCAGGTGGGCATGCTCAGGGTTATGGATGCTGCCGGTGTCAGCAAGGATCTCGCGCTGA 46468 | ||||||||||| || ||| || ||| | || ||||| |||||||||||| || Sbjct 540 AGTAGGTGGGCATGGTCTTCGTTGTGAATGGTCCCTGTGTCGGCAAGGATCTCGGTTTGT 599 Query 46469 ACCCAATCCCACAC 46482 | ||| ||||| || Sbjct 600 AGCCATTCCCAAAC 613 >seq1963 Length=1223 Score = 196 bits (216), Expect = 2e-45 Identities = 437/641 (68%), Gaps = 25/641 (4%) Strand=Plus/Plus Query 25715 TTACACCTTGTCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTT 25774 ||||| || ||| ||||| || || | ||| ||| || |||||||| |||||||| Sbjct 269 TTACATCTGGTCTTCGGCATATATGGCAGCACTGATGATTGCCCCGCCGACACGGCGCTT 328 Query 25775 CCCGTAGCAGATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGC 25834 |||||||| | ||| |||||||| || ||||||||||| | |||||||||||||| Sbjct 329 GCCGTAGCACAGCGGAACCGGGTTGCCCGACGCGGTGGTGTTCTTCGCGCTGCCGAAGGC 388 Query 25835 GTAGCTGGGCAAGTTCTCCGGCGCCGCGCTCTGCTTCAGGCCCTGTGCTTGGGGGCTGAG 25894 ||||| || |||||| ||||| ||||| ||| || || || ||||||||||| Sbjct 389 GTAGCCCGGTGTGTTCTCAGGCGCGGCGCTGGTCTTGAGTCCGCCAGCCTGGGGGCTGAG 448 Query 25895 CATTTGGATGACGCCGCCGGCAACCATCCCTATCCCTGCA---GGCAGC-GCATACGG-- 25948 ||||||||| ||||||||||| || | || || || ||| ||| | ||| | Sbjct 449 CATTTGGATCACGCCGCCGGCGACAAGGCCGATGCCCGCACCTATGAGCGGGGTACCGAA 508 Query 25949 -GGCTATGACGGGAAAAGCGTAGGAAGCAGCGATCAGCACAGCCCCGACTATCGTCTGCA 26007 ||| || | ||||| | | || | |||| | || ||||| || || || | Sbjct 509 AGGCGTTGCAGAGAAAATAACACCCA-CAACAATCAAGATCGCGCCGACGATGGTTTGAA 567 Query 26008 CCAACCCGCCACGCTTCCGGCC-ACGCATGACCGGAGCAATGCGAATTTCCTCGGCGCCC 26066 | ||||| ||||| | ||| ||| | || || |||||||| || || |||| || Sbjct 568 GAATACCGCCGCGCTTGCTGCCTACG-ACCACGGGCGCAATGCGGATATCTCCGGCACCG 626 Query 26067 CCG-AACTGCAGCTCATCTTGGGAAATGTTCCGTTTCCCACGGAATACAGCGAACTCCAT 26125 | |||| |||||| | | || || || || | || || || |||||||| | Sbjct 627 GTGTAACT-CAGCTCCTTCTCCCCGATATTGCGCTTATCGCGAAACACCGCGAACTCAAG 685 Query 26126 ACCTCGCAGGTGGGAATTGGCGAGGAAGCGCTCGAGGCCTGGAATCTGCACGCACAAGGC 26185 ||| ||| | || ||| | || || ||||||| || || ||||||||||| | || Sbjct 686 ACCGCGCGACTTGGCATTCGAAAGAAATCGCTCGAATCCAGGGATCTGCACGCATAGTGC 745 Query 26186 CTTGATCGCTTCCGCAGTCGACCCGA---CTAGCATACGGTACTCCCGGCCGAACTGCCG 26242 |||||||| || || | ||| || | ||| | | ||| || || || || Sbjct 746 TTTGATCGCCTCAGCCGGCGATTTGACCGCAAGCTTGAAGGACT---TTCCAAATTGTCG 802 Query 26243 GAGCGCGCCGTAGAGTTTGATGGTGGTCATCGG--AGT-GTGGTGCGCTGCGATG--GTC 26297 |||| |||| ||| || || ||||| || || || | |||| |||| | Sbjct 803 GAGCTGCCCGTGAAGTCGAATTGTCGTCATGGGTTGGTAGTTGATCGCT--GATGCCTGC 860 Query 26298 ATGTGTTTCTCCAGGTAATAAAAAACCGCCCGGAGGCGGTT 26338 || ||||||| || ||||||||||||||||||||||||| Sbjct 861 ATCACTTTCTCCGGGCAATAAAAAACCGCCCGGAGGCGGTT 901 >seq1512 Length=1527 Score = 154 bits (170), Expect = 6e-33 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25715 TTACACCTTGTCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTT 25774 |||||||| ||||| || |||| ||| ||| ||||| ||||| ||| ||||| Sbjct 946 TTACACCTGATCCTCAGCATAAACTCCAGCACTGATGATCGCGCCGCCTACCCGCCGCTT 887 Query 25775 CCCGTAGCAGATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGC 25834 |||||||||| ||| |||||||| ||| || |||||||| |||||||||||||||| Sbjct 886 GCCGTAGCAGAGCGGTACCGGGTTACCGGATGCAGTGGTGTTCTTGGCGCTGCCGAAGGC 827 Query 25835 GTAGCTGGGCAAGTTCTCCGGCGCCGCGCTCTGCTTCAGGCCCTGTGCTTGGGGGCTGAG 25894 || | || |||||| || |||||||| ||| ||||| || ||||| ||||| Sbjct 826 ATACCCCGGGGTGTTCTCAGGTGCCGCGCTGGTCTTGAGGCCGCCGGCCTGGGGACTGAG 767 Query 25895 CATTTGGATGACGCCGCCGGCAACCATCCCTATCCCTG 25932 ||||||||| |||||||| || || | | | ||||||| Sbjct 766 CATTTGGATTACGCCGCCAGCCACGAGCGCAATCCCTG 729 Score = 136 bits (150), Expect = 2e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25725 TCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTTCCCGTAGCAG 25784 ||||| |||||||| | ||| ||| ||||| || ||||| ||||| | ||| |||| Sbjct 355 TCCTCAGCGTAAATAGCAGCGCTGATGATCGCGCCACCCCAGCGGCGGTGGCCGCAGCAA 296 Query 25785 ATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGCGTAGCTGGGC 25844 | ||| |||||||| ||| ||| ||||| || | ||| ||| || || || | ||| Sbjct 295 AGCGGTACCGGGTTGCCGGAGGCTGTGGTATTCCGAGCGGAGCCAAACGCATATCCCGGC 236 Query 25845 AAGTTCTCCGGCGCCGCGCTCTGCTTCAGGCCCTGTGCTTGGGGGCTGAGCATTTGGATG 25904 ||| || ||||| | |||| ||| ||||| || |||||||||||||||||||| Sbjct 235 GTGTTTTCTGGCGCTGAGCTCGTCTTGAGGCCGCCAGCCTGGGGGCTGAGCATTTGGATT 176 Query 25905 ACGCCGCCGGCAACCATCCC 25924 ||||||||||| ||||| || Sbjct 175 ACGCCGCCGGCGACCATACC 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194809911385830