Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq686 116 1e-21 >seq686 Length=3192 Score = 116 bits (128), Expect = 1e-21 Identities = 270/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600 || ||||| | ||| | |||||| | |||| || | || | |||||||||||| | Sbjct 2481 TAACCCGTGGTCGGTATCCATTCCGTTTTCAAGCTGCGAAACACGCGCTCCATTGGCGCG 2422 Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660 || |||||||| ||||| ||||| ||||| ||||| | ||||| || | |||||| | Sbjct 2421 TTGTCCCAGCAATTTCCCCGCCGGCTCATGCTCTGGCGCATCCGATAACGCCACAGCCGC 2362 Query 39661 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 39720 || || || | | |||| ||| || |||||||| ||| |||| || || Sbjct 2361 TGGCGAAATAGACGACTCGCATACTGTGACCCTTGATCCGAGTGAAACAGCAGGCCTTGA 2302 Query 39721 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 39780 || || || || || | ||||| ||||| || || || || | ||||||| Sbjct 2301 GGTTTGCCTCGTTGCTCGTAAGCCATATCCAGCGCCTTGATAACCAGATCGGCGTCCGGC 2242 Query 39781 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 39840 ||||| |||||||||||| | || | | || || || || || || ||| Sbjct 2241 TTTTCCGACAACGCCCAGCCCACTACCCGGCGTGTGCAAAGATCCAGCACGACAGCCAGG 2182 Query 39841 TACGCCCAGCGCTTACCC---GTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 39897 || ||| || ||| | |||||| ||||| | || |||||||||||||| || Sbjct 2181 TAATGCCA---TTTCCCCTGGGCCCAGATGTAGGTGATGTCGCCGCACCACACCTGGTTG 2125 Query 39898 GGCTCGGTCACGGCGAACTGCCG-TTCAAGGTAGTTAGGGATA 39939 || | | || |||||| ||| |||||| | ||| |||||| Sbjct 2124 GGTGCCGGAACATCGAACTCCCGATTCAAGAT-GTTCGGGATA 2083 Score = 116 bits (128), Expect = 1e-21 Identities = 270/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975 || ||||| | ||| | |||||| | |||| || | || | |||||||||||| | Sbjct 2481 TAACCCGTGGTCGGTATCCATTCCGTTTTCAAGCTGCGAAACACGCGCTCCATTGGCGCG 2422 Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035 || |||||||| ||||| ||||| ||||| ||||| | ||||| || | |||||| | Sbjct 2421 TTGTCCCAGCAATTTCCCCGCCGGCTCATGCTCTGGCGCATCCGATAACGCCACAGCCGC 2362 Query 17036 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 17095 || || || | | |||| ||| || |||||||| ||| |||| || || Sbjct 2361 TGGCGAAATAGACGACTCGCATACTGTGACCCTTGATCCGAGTGAAACAGCAGGCCTTGA 2302 Query 17096 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 17155 || || || || || | ||||| ||||| || || || || | ||||||| Sbjct 2301 GGTTTGCCTCGTTGCTCGTAAGCCATATCCAGCGCCTTGATAACCAGATCGGCGTCCGGC 2242 Query 17156 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 17215 ||||| |||||||||||| | || | | || || || || || || ||| Sbjct 2241 TTTTCCGACAACGCCCAGCCCACTACCCGGCGTGTGCAAAGATCCAGCACGACAGCCAGG 2182 Query 17216 TACGCCCAGCGCTTACCC---GTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 17272 || ||| || ||| | |||||| ||||| | || |||||||||||||| || Sbjct 2181 TAATGCCA---TTTCCCCTGGGCCCAGATGTAGGTGATGTCGCCGCACCACACCTGGTTG 2125 Query 17273 GGCTCGGTCACGGCGAACTGCCG-TTCAAGGTAGTTAGGGATA 17314 || | | || |||||| ||| |||||| | ||| |||||| Sbjct 2124 GGTGCCGGAACATCGAACTCCCGATTCAAGAT-GTTCGGGATA 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132153698859000