Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1113 140 3e-28 >seq1113 Length=254142 Score = 140 bits (154), Expect = 3e-28 Identities = 381/581 (66%), Gaps = 2/581 (0%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||| | ||| ||||| ||||||||||| || || | ||| | | ||| |||| Sbjct 12983 GCTCTACGTGATTCAGATAGATATGCGCGTCACCGATGACATGGATGAACTCGCCAGCTT 13042 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || || || || || |||| || ||| |||| || || || ||||| || |||| Sbjct 13043 TCAGTCCTACCACTTGCGCGACCAAACGCGTCAGCAACGCATAGCTGGCAATATTAAACG 13102 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| |||| || || || |||| ||||| || | |||||| ||||| || ||| || Sbjct 13103 GCACGCCTAGTCCAATATCGGCCGAGCGTTGGTACATCTGGCACGACAGTTCATCATCCG 13162 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 | ||||| || || || | |||||||||| || | ||||| | ||||| || Sbjct 13163 CCACGTAAAACTGACAAAACATGTGGCACGGAGGCAATGCCATTTCATTCAGATCAGCCG 13222 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | ||||| || ||| ||| || | | ||||| || ||| | | | ||||| Sbjct 13223 GATTCCAAGCTGACAGCACAATTCGGCGGTCATTGGGATTCGTGCGGAGCTTATGGATCA 13282 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 | | | || ||||||||| | || || || |||||| || | | || |||| Sbjct 13283 CCT-CGGCAAGCTGGTCCACGCCTTGGCCGCTATAGTCGGCGTGCATATCCGTGTACTTG 13341 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || ||||| || | ||| || || || || ||||| || | || ||| |||| || || Sbjct 13342 GCACCAAAATGGCGCCATTGAAAACCATAAACCGGTCCAAGATCTCCCACCTCGCGTGAC 13401 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | | || | |||||| | || || ||||| | ||||||| || | || | Sbjct 13402 TGCAGTCCTCTACTGTCCAAGTACTCGCGCGACCCATTGCCGTCCCAAATGTGAACATTC 13461 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 | ||| | | |||||| | || || | |||||||||| ||||||| || Sbjct 13462 TTTTGCTGAAGCGTGTGCGCATTCGTGTCACCACTAATAAACCACAGCAACTCCTCGGCC 13521 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || || ||| |||| ||||||||||||| |||||| Sbjct 13522 ACACCACGCCAAAACACCTTCTTCGTCGTCAGCAACGGAAA 13562 Score = 140 bits (154), Expect = 3e-28 Identities = 381/581 (66%), Gaps = 2/581 (0%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 |||||| ||||||||||||| |||| ||| || |||| ||||||| |||||||| Sbjct 13562 TTTCCGTTGCTGACGACGAAGAAGGTGTTTTGGCGTGGTGTGGCCGAGGAGTTGCTGTGG 13503 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || | || || | |||||| | | ||| | | || | || |||||| Sbjct 13502 TTTATTAGTGGTGACACGAATGCGCACACGCTTCAGCAAAAGAATGTTCACATTTGGGAC 13443 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | ||||| || || | |||||| | || | | || || |||| ||| || Sbjct 13442 GGCAATGGGTCGCGCGAGTACTTGGACAGTAGAGGACTGCAGTCACGCGAGGTGGGAGAT 13383 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 | || ||||| || || || || ||| | || ||||| || |||| || | | Sbjct 13382 CTTGGACCGGTTTATGGTTTTCAATGGCGCCATTTTGGTGCCAAGTACACGGATATGCAC 13323 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518 || |||||| || || || | ||||||||| || | | |||||| | | | Sbjct 13322 GCCGACTATAGCGGCCAAGGCGTGGACCAGCTTGCCG-AGGTGATCCATAAGCTCCGCAC 13264 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 ||| || ||||| | | || ||| ||| || ||||| ||| ||||| | || Sbjct 13263 GAATCCCAATGACCGCCGAATTGTGCTGTCAGCTTGGAATCCGGCTGATCTGAATGAAAT 13204 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 ||| | || |||||||||| | || || || ||||| ||| ||| || ||||| || Sbjct 13203 GGCATTGCCTCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGATGAACTGTCGTG 13144 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 |||| | || ||||| |||| || || || |||| |||||||| || ||||| || || Sbjct 13143 CCAGATGTACCAACGCTCGGCCGATATTGGACTAGGCGTGCCGTTTAATATTGCCAGCTA 13084 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758 || |||| ||| || |||| || || || || || |||| ||| | | || Sbjct 13083 TGCGTTGCTGACGCGTTTGGTCGCGCAAGTGGTAGGACTGAAAGCTGGCGAGTTCATCCA 13024 Query 34759 TACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 | | || || ||||||||||| ||||| ||| | |||| Sbjct 13023 TGTCATCGGTGACGCGCATATCTATCTGAATCACGTAGAGC 12983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448239902830800