Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3385 168 2e-36 seq3939 105 2e-17 >seq3385 Length=38424 Score = 168 bits (186), Expect = 2e-36 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| || || || |||| ||||| | ||||||||||||||||||||| || ||||| Sbjct 14326 TTTTGAATATTGTAGTCCGAAAGGGCACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATC 14385 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || ||||| || ||||| |||| ||||||||||||||||| || || || || |||||| Sbjct 14386 AGACGTTGCTGCTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTAACATTTTCG 14445 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || ||| ||||| | ||| || ||||| || || | |||||||||||| Sbjct 14446 ATGCTGTCGGACGATTCCACCTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAAA 14505 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 14506 ATCTGCAT 14513 >seq3939 Length=136313 Score = 105 bits (116), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || ||||| | ||| ||||| ||||||||||| |||||||| | || Sbjct 72391 ACGAAGACGCARCACTAGGTGCAAAGTCGACTCCTTTTGGATGTTGTAATCCGCCAAAGT 72332 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || ||||| || ||||| |||||||| |||| ||| Sbjct 72331 ACGGCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGACGTTGCTGGTCAGGRGGAATTCC 72272 Query 211013 T 211013 | Sbjct 72271 T 72271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159092370685475