Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3385 149 1e-30 seq147 116 9e-21 seq3939 107 5e-18 seq2167 91.5 4e-13 seq58 86.0 1e-11 >seq3385 Length=38424 Score = 149 bits (164), Expect = 1e-30 Identities = 148/190 (78%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTC--CCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||| | |||||| || | |||| | | |||||||| |||||||| ||||| |||| Sbjct 14326 TTTTGAATATTGTAGTCCG--AAAGGGCACGTCCATCTTCCAGCTGCTTGCCAGCAAAGA 14383 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || ||||| || || |||||||| ||||||||||| ||||| || ||||| ||| || Sbjct 14384 TCAGACGTTGCTGCTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTAACATTTT 14443 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||| |||| || | |||||| || || || || |||||||| |||||||| |||| | Sbjct 14444 CGATGCTGTCGGACGATTCCACCTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAA 14503 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 14504 AAATCTGCAT 14513 >seq147 Length=123988 Score = 116 bits (128), Expect = 9e-21 Identities = 94/110 (85%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 6761 TTTAACTTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAA 6819 ||||| |||| |||||||||||||||||||||||||| | ||||||||| ||| | || Sbjct 44339 TTTAA-TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTTTTTTAA 44396 Query 6820 GGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||||||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 44397 AGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 44446 Score = 91.5 bits (100), Expect = 4e-13 Identities = 93/118 (79%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 7761 AATTAAACCACATACTCCACCGCTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACC 7820 ||||||||||||| ||||||||||| | | || |||||| || |||||| ||| || | Sbjct 44345 AATTAAACCACATGCTCCACCGCTTGTGTAGACTCCCGTCAATTCCTTTGAATTTCAATC 44286 Query 7821 TTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGCGTTAGCTTAATTA-ATATAAAAA 7876 ||||| ||||| | ||||| ||| | || ||||||||||| |||| || |||||| Sbjct 44285 TTGCGATCGTACTTTTCAGGCGGAGTGCTTAACGCGTTAGCT--ATTATATCTAAAAA 44230 >seq3939 Length=136313 Score = 107 bits (118), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| | ||| || || ||||||| |||||||| |||||||| Sbjct 72391 ACGAAGACGCARCACTAGGTGCAAAGTCGACTCCTTTTGGATGTTGTAATCCGCCAAAGT 72332 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||||||||| ||||| || ||||| ||||| || ||||| || Sbjct 72331 ACGGCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGACGTTGCTGGTCAGGRGGAATTCC 72272 Query 225612 T 225612 | Sbjct 72271 T 72271 >seq2167 Length=55589 Score = 91.5 bits (100), Expect = 4e-13 Identities = 79/96 (82%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 6775 ATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAGCAGTGGAG 6833 ||||||||||||||||||||||| | || |||||| || |||| ||||||||||| | Sbjct 42368 ATGATCAGCCACATTGGGACTGAGACACTGCCCAAACTTTTTAAA--GGCAGCAGTGGGG 42311 Query 6834 AATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 | | || ||||||| ||||||||||||| || ||| Sbjct 42310 ATTTTTGGACAATGAGCGAAAGCTTGATTCAGCAAT 42275 >seq58 Length=133778 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 6772 AGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAGCAGTG 6830 ||||||||| ||||||||| |||||| | ||||| || ||| | || |||||||||| Sbjct 47002 AGAATGATCTGCCACATTGAGACTGAGACACGGCTTAAA-CTTTTGTAAAGGCAGCAGTG 47060 Query 6831 GAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 | |||| || |||||| |||||||||||||| || ||| Sbjct 47061 GGGAATTTTAGACAATAAGCGAAAGCTTGATCCAGCAAT 47099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192469853586410