Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1101 141 8e-29 seq446 118 9e-22 >seq1101 Length=81374 Score = 141 bits (156), Expect = 8e-29 Identities = 475/723 (66%), Gaps = 20/723 (3%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||||||||| || || || ||||||| || |||||| | ||||| | || || Sbjct 7853 ACACGCTTTTCGAAAAAGTTGGTCTTGCCTTGTAGCGAAATCATATCCATCCAGTCGAAT 7794 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCA-CACTTTA-GAGCTACAAGCAATCGGTCAGCTA 4389 || || | |||| ||| || || ||| ||| |||| | || |||||||| | Sbjct 7793 GGGTTCTTGGCGTGATAAATCTTGGCAACACCCAGTGAG-TACA-GTAAACGGTCAGCCA 7736 Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC-ACAGGTAGC 4448 | || || || ||||| | ||||||| | |||| || ||||| | ||| ||||| || Sbjct 7735 CGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAG-CTCGACAGGGAGT 7677 Query 4449 GCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 | || || |||||| || || || || || || || || || || | | | Sbjct 7676 GAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCCCGAATAATCTCGTGCACCCGA 7617 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAA 4567 | | ||||| || | || | || ||| | ||| ||||| || |||| Sbjct 7616 CTCTCCGGCAACTTATTAACCA-GTTTGGAATACATGAGACAAGCAAAGTCCGTGTGCAT 7558 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 || || || | ||||| || ||||| || || | | || ||||| | ||| | || Sbjct 7557 GCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCAGGCATAAGACCACGTTT 7498 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 || |||||||| || | | || || || || ||||| ||||| || || | |||||| Sbjct 7497 CTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATGCCCTCCACCGAGGCAAA 7438 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT--TTAATCCATTTTAATGCCCAG 4745 ||| | || || || |||| || | | | | | ||| || | |||||| Sbjct 7437 CGCCAATAGACGCTCTGCGTACGA--TGACACTCGCGGGTCACACCACTTGAGTGCCCAA 7380 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT--TACTTTTTT 4803 || ||||| || || || || || || || | || || | | | | ||| | | Sbjct 7379 TTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAGCAGATGGTCCTTCTCT 7320 Query 4804 CAA--ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 | | || |||||| |||| || || || || || ||| | || || || ||||| Sbjct 7319 CCAGCAT---TCTTGA-TATATGTATCAATAAGCAGCGAATAGACCTCCGAGTGAATATT 7264 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 || || ||||||||||| ||||| ||||| | |||||| | |||||| |||||||| | Sbjct 7263 CTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTTGCACTTCGTTGCT 7204 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 ||| | | | ||||||||| || || || || |||||||||||||| || | || Sbjct 7203 AAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAAAAAAGGCAAGCAC 7144 Query 4982 ATG 4984 ||| Sbjct 7143 ATG 7141 >seq446 Length=286769 Score = 118 bits (130), Expect = 9e-22 Identities = 404/619 (65%), Gaps = 16/619 (3%) Strand=Plus/Minus Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 || || |||||||| || || || || ||||| | ||||||| | |||| || ||||| Sbjct 151181 AGTAAACGGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATG 151122 Query 4434 AATCTC-ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | ||| ||||| || | || || |||||| || || || || || || || || Sbjct 151121 AG-CTCGACAGGGAGTGAGTCACGCACAAACTCGTGCTCRATTGTCACAGCATCCCGAAT 151063 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACG 4551 || || | | | | | ||||| || | || | || ||| | ||| | Sbjct 151062 AATCTCGTGCACCCGACTCTCCGGCAACTTATTAACCA-GTTTGGAATACATGAGACAAG 151004 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||| || |||| || || || | ||||| || ||||| || || | | || | Sbjct 151003 CAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCAG 150944 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | ||| | || || |||||||| || | | || || || || ||||| |||| Sbjct 150943 GCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATGC 150884 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT--TTAAT 4729 | || || | ||||||||| | || || || |||| || | | | | | Sbjct 150883 CCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA--TGACACTCGCGGGTCACA 150826 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| || | |||||| || ||||| || || || || || || || | || || | Sbjct 150825 CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAG 150766 Query 4790 TAATT--TACTTTTTTCAA--ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | | | ||| | || | || |||||| |||| || || || || || ||| | Sbjct 150765 CAGATGGTCCTTCTCTCCAGCAT---TCTTGA-TATATGTATCAATAAGCAGCGAATAGA 150710 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 || || || ||||| || || ||||||||||| ||||| ||||| | |||||| | || Sbjct 150709 CCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTA 150650 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||| ||||| || | ||| | | | ||||||||| || || || || ||||||| Sbjct 150649 CTTGCACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTG 150590 Query 4966 CAAAAAACGCCAAAACATG 4984 ||||||| || | ||||| Sbjct 150589 CAAAAAAGGCAAGCACATG 150571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427028703261995