Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3828 161 1e-34 seq1101 150 2e-31 seq446 150 2e-31 >seq3828 Length=141882 Score = 161 bits (178), Expect = 1e-34 Identities = 952/1516 (63%), Gaps = 33/1516 (2%) Strand=Plus/Plus Query 77151 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 77210 ||| |||| || || || ||||| || | || || ||||| || | || || ||| Sbjct 94339 CGATTGTACATGTTCGACGTGTATGGCTCGATGGACTCGTTGTTACCAAGGATCTGGGCA 94398 Query 77211 GTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 77270 || |||||||| ||||| || ||||| | ||| || | || ||| || | | | Sbjct 94399 GTCGAAGCAGTAGGCATGGGAGCCACTAGCAAAGAGTTGCGGATACCGTGCTTAATCACA 94458 Query 77271 TTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG---GTACAACATCCCAAAGATCG 77327 || | ||| ||| ||| ||||||||| | || | | | ||| |||| | || Sbjct 94459 TTCTTTTTCAGAGCGACCCAGTCCCAAAGACCAGAGGACGGAATGACACCCCACATGTCA 94518 Query 77328 TATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTT 77387 | || | || || || ||||| || || | | ||||||| || || || | ||| Sbjct 94519 AACTGGAAGATACCCTTGCTAGCCGGGGAGCCCTGAAATGTTTCGTACGGGCC--CAGTT 94576 Query 77388 TCA--GCTAGTTCACAACTCGCT---TCCAATGCTCCGTAATAAATTGTTTCGAAAATCT 77442 | || | || || | | | |||| | | ||||| || || || ||||| | Sbjct 94577 CCTTGGCAATCTC-CA--TGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATAT 94633 Query 77443 TCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCAT 77502 |||| || || || | || | || ||||||| |||| | |||||| || |||| Sbjct 94634 TCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCGTAATTCATAAGAATGAATGCAT 94693 Query 77503 CTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTT 77562 | || | |||||||| |||||||| | ||| | || | | |||| || ||| ||| | Sbjct 94694 CGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATATTAGACGTTTGAGCCT 94753 Query 77563 CTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAA 77622 ||| || || || || || | ||| |||| || || ||||| | || || || Sbjct 94754 CTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTAAGATTACGGGTGACCACCTTCG 94813 Query 77623 CCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTA 77682 ||| || | || || | ||||| || | | |||||| | | ||| | Sbjct 94814 TCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTTTCAACAAATTTTGGTAGAGCCA 94873 Query 77683 TAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTAC 77742 ||| || | || || || || || ||||| | | ||| | || | ||| | Sbjct 94874 CAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGACGTATACTCCATCACCTCACAGC 94933 Query 77743 ATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGT 77802 | | ||||| || ||| ||||| ||||| || |||||| ||| || | || Sbjct 94934 ACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTAACCGCGT 94993 Query 77803 CCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTC---GATAATAGATTTCC 77859 ||||| |||| |||||||| || || |||||||| | || ||| || | || Sbjct 94994 CCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGCGCATCTAAGATGCTAAA---CC 95050 Query 77860 AGA-CGACTCTAGCTTTTATCATAGATTTGT-ATCGCCTC--TCTCTTTCATATTGAGTA 77915 | | | || | || || || | |||| | | | || || | ||| || | | Sbjct 95051 ATAGCTGCTGT-GCATTAATTGT---TTTGCGAGCACGTCCTTCCCGTTCGTACTTTTCA 95106 Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 | ||| || || || |||||||| || | | |||| ||| ||||| || Sbjct 95107 AAAAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGAGCAGGTGCTTCGTTTGGACAA 95166 Query 77976 ATCAATGACCAGTCACCAT---CTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 | || ||| | |||| ||||| || ||||||||||| | |||||| | ||| Sbjct 95167 AATAAACTCCACTTGCCATTGGCTTCC---ACCCGTTTCATAAACAAATCAGGAACCCAA 95223 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 || || |||| || || | || ||| ||||| || ||||| ||| || Sbjct 95224 AGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCGTGGTTCTTACGAAGGTCC 95283 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 |||||||| | | || | |||||| || || | |||| || | | || ||| Sbjct 95284 AGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACAGCAAAAGACCCTTTGCGT 95343 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||| || || || || | |||| ||| |||| ||| | || | |||||| ||||| Sbjct 95344 TTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAACACACGCAACATAGGAATG 95403 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 || |||||||| | ||||| || ||| ||||||||| | | || || || || Sbjct 95404 ATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTAGTGGCTCGTATGTTGTGC 95463 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 || || || ||||| || ||| ||| || || || || |||||||||| || Sbjct 95464 ATACTGATGCCAATTCCACCCGCCCACTTGGAAATGCATGCACATTGTTTCAATGTGTCA 95523 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 || ||||| || || |||||| ||| || | ||| || |||| ||| || Sbjct 95524 TAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAARCACGAGGACAGTTGGGGA 95583 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452 || |||||| |||||||| || || || | ||||||||||| | || | ||| | Sbjct 95584 CGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCGTAAAAAACTTCTGAGACATC 95643 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 | | ||| || || | ||| | || || | | | || || |||| ||| || ||| Sbjct 95644 AACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTGTGGATACCTAACGCAACGCGC 95703 Query 78513 ATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTT 78572 || | | || || || | || || ||| ||| | || | ||| ||| Sbjct 95704 ATAATTAAYTGTTGCGGCCGCTCCACGACTTTACCATTAACACGAAAAAGATATCCTTTC 95763 Query 78573 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAA 78632 || | ||||| || || ||||| | || |||||| | |||| ||||| ||||| Sbjct 95764 TCGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCCCGGTCGTRRATAATTGCAGAA 95823 Query 78633 TTTAGTTTATCTTTGT 78648 || || | |||||||| Sbjct 95824 TTAAGCTCATCTTTGT 95839 >seq1101 Length=81374 Score = 150 bits (166), Expect = 2e-31 Identities = 401/607 (66%), Gaps = 7/607 (1%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| | ||| ||||| || || | || ||||| | |||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | ||||||| ||||| || |||||||| || |||||||| || | ||| ||||| | Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 7466 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC-TGGCT-TC 48310 | ||||| ||||| || || | ||||| || || | |||| |||| || | || Sbjct 7465 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 7406 Query 48311 GTTGTGTAT-CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | | | |||| ||||||||| || ||||| || ||||| || || || || | Sbjct 7405 GCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAA 7346 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 | ||| | ||| || || || || || | || ||||| || | || Sbjct 7345 TGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCG 7286 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 ||| | || ||||||||||| ||||| || |||||||| ||||| || || | |||| Sbjct 7285 AATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTT 7226 Query 48490 CTGTGATCTGTACCTCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATC 48547 | | | || || || | | ||| |||| || | || || || || || ||||| Sbjct 7225 CAGGTACTTGCACTTCGTTGCTAAA--ATTCATGGCGAGGTTTTCGTTCACAATGCCATC 7168 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 || || |||||||| || | ||||| || | |||| ||| ||| || ||||| Sbjct 7167 GCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTT 7108 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | |||||| |||| ||| | | || | || || |||||||| || || ||||| Sbjct 7107 GTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTC 7048 Query 48668 TGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATT 48727 || || || ||||| | ||| | || | | || || || |||| || || | ||| Sbjct 7047 GGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGATT 6988 Query 48728 TGGATTT 48734 || ||| Sbjct 6987 GGGGTTT 6981 >seq446 Length=286769 Score = 150 bits (166), Expect = 2e-31 Identities = 401/607 (66%), Gaps = 7/607 (1%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| | ||| ||||| || || | || ||||| | |||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | ||||||| ||||| || |||||||| || |||||||| || | ||| ||||| | Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 150896 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC-TGGCT-TC 48310 | ||||| ||||| || || | ||||| || || | |||| |||| || | || Sbjct 150895 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 150836 Query 48311 GTTGTGTAT-CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | | | |||| ||||||||| || ||||| || ||||| || || || || | Sbjct 150835 GCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAA 150776 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 | ||| | ||| || || || || || | || ||||| || | || Sbjct 150775 TGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCG 150716 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 ||| | || ||||||||||| ||||| || |||||||| ||||| || || | |||| Sbjct 150715 AATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTT 150656 Query 48490 CTGTGATCTGTACCTCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATC 48547 | | | || || || | | ||| |||| || | || || || || || ||||| Sbjct 150655 CAGGTACTTGCACTTCRTTGCTAAA--ATTCATGGCGAGGTTTTCGTTCACAATGCCATC 150598 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 || || |||||||| || | ||||| || | |||| ||| ||| || ||||| Sbjct 150597 GCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTT 150538 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | |||||| |||| ||| | | || | || || |||||||| || || ||||| Sbjct 150537 GTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTC 150478 Query 48668 TGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATT 48727 || || || ||||| | ||| | || | | || || || |||| || || | ||| Sbjct 150477 GGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGATT 150418 Query 48728 TGGATTT 48734 || ||| Sbjct 150417 GGGGTTT 150411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694633936309600