Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3828 206 4e-48 seq1101 163 4e-35 seq446 163 4e-35 >seq3828 Length=141882 Score = 206 bits (228), Expect = 4e-48 Identities = 1069/1697 (63%), Gaps = 41/1697 (2%) Strand=Plus/Plus Query 75745 TCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 75804 |||| |||| || || || ||||| || | || || ||||| || | || || || Sbjct 94338 TCGATTGTACATGTTCGACGTGTATGGCTCGATGGACTCGTTGTTACCAAGGATCTGGGC 94397 Query 75805 AGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 75864 ||| |||||||| ||||| || ||||| | ||| || | || ||| || | | | Sbjct 94398 AGTCGAAGCAGTAGGCATGGGAGCCACTAGCAAAGAGTTGCGGATACCGTGCTTAATCAC 94457 Query 75865 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATG---GTACAACATCCCAGAGATC 75921 || | ||| ||| ||| ||||||||| | || | | | ||| |||| | || Sbjct 94458 ATTCTTTTTCAGAGCGACCCAGTCCCAAAGACCAGAGGACGGAATGACACCCCACATGTC 94517 Query 75922 GTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTT 75981 | || | || || |||||||| || || | | |||||||||| | || Sbjct 94518 AAACTGGAAGATACCCTTGCTAGCCGGGGAGCCCTGAAATGTTTCGTACGGGCC------ 94571 Query 75982 TTCAGCTAGTTCGCAA-CTC-------GCCTCTAACGCACCGTAATAAATTGTTTCGAAA 76033 ||| | || |||| ||| | ||| | || | | ||||| || || || ||| Sbjct 94572 --CAGTTCCTTGGCAATCTCCATGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAA 94629 Query 76034 ATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAAT 76093 || ||||| || || || | || | || ||||| | |||| | |||||| ||| Sbjct 94630 ATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCGTAATTCATAAGAATGAAT 94689 Query 76094 GCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCA 76153 ||||| || || |||||||| |||||||| | ||| | || | | |||| || ||| | Sbjct 94690 GCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATATTAGACGTTTGA 94749 Query 76154 GCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213 || |||| || ||||| || || | || |||| || || ||||| | | || || Sbjct 94750 GCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTAAGATTACGGGTGACCACC 94809 Query 76214 TTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAAACATATTAAGA 76273 || ||| || | || || | ||||| || | | ||||| | ||| Sbjct 94810 TTCGTCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTTTCAACAAATTTTGGTAGA 94869 Query 76274 GCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCC 76333 || | ||| || | || || || || || ||||| | | ||| | || | ||| Sbjct 94870 GCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGACGTATACTCCATCACCTCA 94929 Query 76334 GTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACAT 76393 ||| | ||||| | ||| || |||||||| || |||||| ||| |||| Sbjct 94930 CAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTAACC 94989 Query 76394 GAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTC---GATAATAGAT 76450 | ||||||| |||| | |||||| || || |||||||| | || ||| || | Sbjct 94990 GCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGCGCATCTAAGATGCTAAA- 95048 Query 76451 TTCCAGA-CGACTCTAGCTTTTATTATAGATTTGT-ATCGCTTC--TCTCTTTCATATTG 76506 ||| | | || | || || ||| | |||| | | | || || | ||| || | Sbjct 95049 --CCATAGCTGCTGT-GCATTAATTGT---TTTGCGAGCACGTCCTTCCCGTTCGTACTT 95102 Query 76507 TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGG 76566 | | | | | || || || |||||||| || | | | |||| ||| || || Sbjct 95103 TTCAAAAAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGAGCAGGTGCTTCGTTTGG 95162 Query 76567 ACACATCAATGACCACTCACCAT---CTTCCTTAACCCGTTTCATAAAGAGATCAGGTAT 76623 ||| | || ||||| |||| ||||| |||||||||||||| | |||||| | Sbjct 95163 ACAAAATAAACTCCACTTGCCATTGGCTTCC---ACCCGTTTCATAAACAAATCAGGAAC 95219 Query 76624 CCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAG 76683 ||| || || |||| || || | || || ||||| || ||||| ||| Sbjct 95220 CCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCGTGGTTCTTACGAAG 95279 Query 76684 ATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGG 76743 || || ||||| | | || | |||||| || || | |||| | || || |||| Sbjct 95280 GTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATA-CAGCAAAAGACCCTT 95338 Query 76744 T-CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTG 76802 | |||||| || || || || | |||| ||| |||| ||| | || | |||||| | Sbjct 95339 TGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAACACACGCAACATAG 95398 Query 76803 GAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATAT 76862 |||| || |||||||| | ||||| || ||| ||||||||| | || || || | Sbjct 95399 GAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTAGTGGCTCGTATGT 95458 Query 76863 TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATG 76922 | ||| | ||| ||||| || ||| || || || ||||| ||||||||| Sbjct 95459 TGTGCATACTGATGCCAATTCCACCCGCCCACTTGGAAATGCATGCACATTGTTTCAATG 95518 Query 76923 TGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 76982 ||||||| || || || || ||||||| ||| || | ||| || |||| || Sbjct 95519 TGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAARCACGAGGACAGTT 95578 Query 76983 GATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAG 77042 | || || |||||| ||||||||||| || || | ||||| || || | || | || Sbjct 95579 GGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCGTAAAAAACTTCTGAG 95638 Query 77043 AAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGA 77102 | | | | ||| || || | | | |||| |||| | | || || |||| || | Sbjct 95639 ACATCAACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTGTGGATACCTAACGCAA 95698 Query 77103 CACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATG 77162 | ||||| | | || || || || || || ||| ||| | || | ||| Sbjct 95699 CGCGCATAATTAAYTGTTGCGGCCGCTCCACGACTTTACCATTAACACGAAAAAGATATC 95758 Query 77163 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAA 77222 ||| || | ||||| || || ||||| | || |||||| | |||| ||||| Sbjct 95759 CTTTCTCGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCCCGGTCGTRRATAATTG 95818 Query 77223 CCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGTGGTAGAAATAATTG 77282 | ||||| || | || || | | | || || || |||| || || | | Sbjct 95819 CAGAATTAAGCTCATCTTTGTGCTGCATCACGATCTCGTAGACATCATCAGCTATGAGCG 95878 Query 77283 GAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAA 77342 ||| ||| |||| || ||||| || | || |||| || ||| || | Sbjct 95879 GAGCAGCAGCTCCTGTTTTCTCATGAACATTYTTGTAAAATACTTCGATATTGTCACTGA 95938 Query 77343 ATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCAT 77402 | | || ||||| | |||||||||||||| ||||| || | || || || | | | Sbjct 95939 AGACCTTGTTTGTATTTTTGTGTAGATTCGACACGGCAATACGTGCCGCCAGCTTGGAAA 95998 Query 77403 AGTCAGGATGTTGTGTA 77419 |||| ||||| || ||| Sbjct 95999 AGTCGGGATGCTGCGTA 96015 >seq1101 Length=81374 Score = 163 bits (180), Expect = 4e-35 Identities = 404/607 (67%), Gaps = 7/607 (1%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | ||| ||||| || || | ||| ||||| | |||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||| |||||||| || ||||| || || |||||||| || | ||| ||||| | Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 7466 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC-TGGCA-TC 46799 | ||||| ||||| || || | || || || | || | |||| |||| || || || Sbjct 7465 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 7406 Query 46800 ATTA-TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | | |||| | | ||||||| || || || || ||||| || || || || | Sbjct 7405 GCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAA 7346 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 | ||| | ||| || || || || || || | ||||||||| || | || Sbjct 7345 TGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCG 7286 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978 ||| | || || ||||| || ||||| || |||||||| ||||| || || | |||| Sbjct 7285 AATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTT 7226 Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATC 47036 ||| | || || || | | ||| |||| | | || || ||||| || ||||| Sbjct 7225 CAGGTACTTGCACTTCGTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAATGCCATC 7168 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 || || |||||||| || | ||||| || | |||| ||||| | || ||||| Sbjct 7167 GCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTT 7108 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 | |||||| |||| ||| | | || | || || ||||||||||| || ||||| Sbjct 7107 GTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTC 7048 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATT 47216 || || || ||||| | ||| | || | || || ||||||| || || | ||| Sbjct 7047 GGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGATT 6988 Query 47217 TGGATTT 47223 || ||| Sbjct 6987 GGGGTTT 6981 >seq446 Length=286769 Score = 163 bits (180), Expect = 4e-35 Identities = 404/607 (67%), Gaps = 7/607 (1%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | ||| ||||| || || | ||| ||||| | |||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||| |||||||| || ||||| || || |||||||| || | ||| ||||| | Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 150896 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC-TGGCA-TC 46799 | ||||| ||||| || || | || || || | || | |||| |||| || || || Sbjct 150895 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 150836 Query 46800 ATTA-TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | | |||| | | ||||||| || || || || ||||| || || || || | Sbjct 150835 GCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAA 150776 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 | ||| | ||| || || || || || || | ||||||||| || | || Sbjct 150775 TGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCG 150716 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978 ||| | || || ||||| || ||||| || |||||||| ||||| || || | |||| Sbjct 150715 AATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTT 150656 Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATC 47036 ||| | || || || | | ||| |||| | | || || ||||| || ||||| Sbjct 150655 CAGGTACTTGCACTTCRTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAATGCCATC 150598 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 || || |||||||| || | ||||| || | |||| ||||| | || ||||| Sbjct 150597 GCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTT 150538 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 | |||||| |||| ||| | | || | || || ||||||||||| || ||||| Sbjct 150537 GTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTC 150478 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATT 47216 || || || ||||| | ||| | || | || || ||||||| || || | ||| Sbjct 150477 GGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGATT 150418 Query 47217 TGGATTT 47223 || ||| Sbjct 150417 GGGGTTT 150411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712898619604800