Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3385 131 4e-25 seq3639 98.7 2e-15 seq3526 98.7 2e-15 seq3939 95.1 3e-14 >seq3385 Length=38424 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||| || |||||||| | ||| | || ||||| || || || || || ||||||||| Sbjct 14326 TTTTGAATATTGTAGTCCGAAAGGGCACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATC 14385 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | |||||| || ||| |||||| || |||||||| ||||| || ||||| || | || Sbjct 14386 AGACGTTGCTGCTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTA-ACATTTTC 14444 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| |||| || | ||| || || | ||| || ||||| || ||||||||||| || || Sbjct 14445 GATGCTGTCGGACGATTCCACCTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAA 14504 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 14505 AATCTGCAT 14513 >seq3639 Length=157838 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||| ||||| || | ||||| || ||||||||||||| ||| ||| || Sbjct 102283 TTCCTTGTCCTCACCAGACTGGAAGCGCCACTGAATGTACTGATTGGCTGTCTCGTCGAG 102342 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 ||| ||| |||||||| |||||||||||||||||||| |||| |||||| || || Sbjct 102343 ATGCGACTCAATGTGGTGAAAAGCGTGCTGTGCCACGTAGGCAAAACGCATGGAAGGGTG 102402 Query 316281 CTTCCAAAC 316289 ||||| || Sbjct 102403 TTTCCACAC 102411 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| ||||| ||| || | |||||| |||||||| ||| ||| Sbjct 103142 GGGAAGCCCTCTAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACCG 103201 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||| || || ||||| || || | || ||| || || ||| | |||||||| Sbjct 103202 TTGGGACCACACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAAC 103261 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 |||||| ||||||| || || || ||||||||||| | || ||||| Sbjct 103262 AGAATCATACCACCGTAAGCAAGCGAGAACTCACAGTTGCAAAGGTC 103308 >seq3526 Length=28024 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||| ||||| || | ||||| || ||||||||||||| ||| ||| || Sbjct 15931 TTCCTTGTCCTCACCAGACTGGAAGCGCCACTGAATGTACTGATTGGCTGTCTCGTCGAG 15990 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 ||| ||| |||||||| |||||||||||||||||||| |||| |||||| || || Sbjct 15991 ATGCGACTCAATGTGGTGAAAAGCGTGCTGTGCCACGTAGGCAAAACGCATGGAAGGGTG 16050 Query 316281 CTTCCAAAC 316289 ||||| || Sbjct 16051 TTTCCACAC 16059 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| ||||| ||| || | |||||| |||||||| ||| ||| Sbjct 16790 GGGAAGCCCTCTAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACCG 16849 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||| || || ||||| || || | || ||| || || ||| | |||||||| Sbjct 16850 TTGGGACCACACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAAC 16909 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 |||||| ||||||| || || || ||||||||||| | || ||||| Sbjct 16910 AGAATCATACCACCGTAAGCAAGCGAGAACTCACAGTTGCAAAGGTC 16956 >seq3939 Length=136313 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || || || || |||||||||||||| || || Sbjct 72397 ACCACCACGAAGACGCARCACTAGGTGCAAAGTCGACTCCTTTTGGATGTTGTAATCCGC 72338 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| || || ||||| |||||||||| |||||| |||||| || Sbjct 72337 CAAAGTACGGCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGACGTTGCTGGTCAGGRGG 72278 Query 282992 AATACC 282997 ||| || Sbjct 72277 AATTCC 72272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046685353445810