Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq446 134 1e-26 seq1101 132 5e-26 >seq446 Length=286769 Score = 134 bits (148), Expect = 1e-26 Identities = 310/462 (67%), Gaps = 8/462 (2%) Strand=Plus/Minus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| ||||| || || | ||| ||||| | |||||| | || || || || | | Sbjct 151008 ACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAG 150949 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGA 23626 || ||||| | || ||||| || | |||||| || | |||| || |||||||| |||| Sbjct 150948 ACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGG-AGCAGAAGGATCCGGAGAAGA 150890 Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG-CATTATAA--T 23683 |||| ||||| || | ||||| |||| ||||| | | | || || | | Sbjct 150889 AAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGT 150830 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 || | ||| || || |||||| || ||| ||| ||||| || || ||||| | Sbjct 150829 CACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGG 150773 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | | ||| || ||| || || | |||||||||||||| || | || Sbjct 150772 CACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCGAAT 150713 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 | | || || |||||||| ||||| |||||||||||||| || || || | |||||||| Sbjct 150712 AGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAG 150653 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | ||| || || || ||| | | || | |||||||| ||||| ||||| || | Sbjct 150652 GTACTTGCACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGG 150593 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 23965 | ||||| || ||||| |||| || | ||||| | ||||| Sbjct 150592 CTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCAT 150551 >seq1101 Length=81374 Score = 132 bits (146), Expect = 5e-26 Identities = 310/462 (67%), Gaps = 8/462 (2%) Strand=Plus/Minus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| ||||| || || | ||| ||||| | |||||| | || || || || | | Sbjct 7578 ACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAG 7519 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGA 23626 || ||||| | || ||||| || | |||||| || | |||| || |||||||| |||| Sbjct 7518 ACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGG-AGCAGAAGGATCCGGAGAAGA 7460 Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG-CATTATAA--T 23683 |||| ||||| || | ||||| |||| ||||| | | | || || | | Sbjct 7459 AAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGT 7400 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 || | ||| || || |||||| || ||| ||| ||||| || || ||||| | Sbjct 7399 CACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGG 7343 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | | ||| || ||| || || | |||||||||||||| || | || Sbjct 7342 CACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCGAAT 7283 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 | | || || |||||||| ||||| |||||||||||||| || || || | |||||||| Sbjct 7282 AGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAG 7223 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | ||| || || || ||| | | || | |||||||| ||||| ||||| || | Sbjct 7222 GTACTTGCACTTCGTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGG 7163 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 23965 | ||||| || ||||| |||| || | ||||| | ||||| Sbjct 7162 CTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCAT 7121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521461827821000