Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq699 156 9e-33 seq3652 91.5 3e-13 >seq699 Length=15708 Score = 156 bits (172), Expect = 9e-33 Identities = 674/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 8251 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 8192 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 8191 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 8132 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | |||| || | | ||||| |||| ||| || || || Sbjct 8131 CTTCCACACCTGGCCGCTCGTGGGCTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGA 8072 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| |||| ||| |||| | | ||| || || || Sbjct 8071 CTTACCAGCACCGTTAGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCAC-- 8015 Query 319223 GGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 || || ||||| | | || |||||||| |||| | | | ||| | Sbjct 8014 GGAGAT----GTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTA-CGAACAGTTC 7960 Query 319283 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || || ||||||| |||| |||| | | ||||| |||||||| ||| Sbjct 7959 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCGGGCTCCGGG 7900 Query 319342 AACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 319398 ||| | || | | ||| || ||| || ||||||| | | || || | Sbjct 7899 AACGTGAACTTCACGTTCTCCGACTC---CAGCTCGTAGTAGGCCTTAGCCTCAGGCTTC 7843 Query 319399 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 319458 | || |||||||| ||||| || |||||||| |||| ||||| || | ||||| Sbjct 7842 TGCTCCACGAACTTGGACAAGTTGCCCTTGTAGATCTTGAGCTTACGG---GTCTCGTAG 7786 Query 319459 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 319518 ||||| || ||||| || | ||| ||||| ||||||||||| ||||| || | | | Sbjct 7785 TGGATGATGTTCGTGCAGACCGTGTCAAGGAAACCGGAGTCGTGCGACACCATGATGGAG 7726 Query 319519 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGA 319578 | |||| | || | ||| ||| | || ||| ||||| ||| | Sbjct 7725 GTCACGTTGGTCAGACTCGTCAAGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAAG 7666 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| || || Sbjct 7665 TGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGAAGCATGGCACGGGCCAGC 7606 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAA----TTGGG---GCAGATTGGCG 319691 |||||||||| ||||| || |||||||| ||| | |||| ||| | |||| Sbjct 7605 TCGAGTTTCATCTTCCAACCACCGGAAAGGGTGCCCACGGCCTGGGCCTGCATCTCGGCG 7546 Query 319692 CTCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 319751 | ||||| || | || || ||| || | || | | |||| Sbjct 7545 GT-------GAAGCCCACACCGGCAAGGGTGTCCTCGACCTCCTTGCGGG---GAGTGTT 7496 Query 319752 TTCCTTTACTTGTTCATCATTGGCA---ATGAAGTCAATGATAGCCGTGTTAGAATCGGA 319808 ||| | | || |||| |||| |||||||| | | | | | || || || Sbjct 7495 ---CTTCA---GGTCCTCATCGGCAAGGATGAAGTCCACAACGGACAGTTCAGCCTCCGA 7442 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTC 319868 | | || | ||| || ||| | |||| || | | || |||||| || || Sbjct 7441 AGCCTGCAGGTTGTGCTCGACGAACACAGTCTTGAGCTCGTCACGGCTGGGGAAGCCCTC 7382 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 7381 AAGCTGGCCGTTGGAGATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGACCGCA 7322 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||| |||| ||| || || ||| | || | ||||||||| | ||| | || Sbjct 7321 CAGACCGTAACGGTGTCCACGCTTGAGGCGAAGACGAGCGTTGTTCAGCAAAATCATACC 7262 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 ||| || || || || || || || | ||||| || Sbjct 7261 ACCGTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 7226 >seq3652 Length=2116 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 1417 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1358 Query 165771 CCACG 165775 ||||| Sbjct 1357 CCACG 1353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057773838977630