Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq130 329 3e-85 seq926 154 2e-32 seq1018 149 6e-31 seq427 149 6e-31 seq482 131 2e-25 seq61 98.7 1e-15 >seq130 Length=37012 Score = 329 bits (364), Expect = 3e-85 Identities = 439/602 (73%), Gaps = 6/602 (1%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 16110 GAGAACCCCAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTAC 16051 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || ||||||||||| || |||||||| | ||||||| |||| || || || | | | || Sbjct 16050 AAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTGGATCTCGTGCACGACCTCAAG 15991 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | | |||||||||||||| ||||||||||||||||||||||| || Sbjct 15990 -GACTGGGTGAACCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCCTTCTT 15932 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 || ||||| || || || ||||||||||| ||| | | ||| | |||||||| Sbjct 15931 TGCTGCCAGTGATGGTATAGTCAACGAGAACTTGGCCATGAACTTCAGCAACGAGGTGCA 15872 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 ||| | ||||| || |||||||||||||| ||||||||||| |||||| | |||||||| Sbjct 15871 AGTGCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGA 15812 Query 116890 AATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 |||| ||| || || ||||||||| | | | | | ||||| || || Sbjct 15811 GGTGTACTCGCTGCTTATTGACACGTACATCAAGGACAT-TGTCGAGAAAACCCACCTGC 15753 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 || ||||| ||||| || ||||| ||| | |||| ||| | |||||||| ||| Sbjct 15752 TGCGTGCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGT 15693 Query 117009 TCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || || || | | | | ||| | || || ||| ||||||| || || || ||||| Sbjct 15692 GCGACCCGC-GCGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGT 15634 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| |||||| ||| | |||| || ||||||||||| || || |||||||| Sbjct 15633 ATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCT 15574 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || || | ||| |||||||||||| | | |||||||| |||| ||||| ||| Sbjct 15573 GGTCTAAGCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCC 15514 Query 117188 TG 117189 || Sbjct 15513 TG 15512 >seq926 Length=12678 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | Sbjct 11640 AAGATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 11699 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| | ||||||| ||||| || ||||| ||| | || Sbjct 11700 TCGGACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGA 11758 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 11759 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 11818 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 11819 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 11870 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | | Sbjct 11871 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 11930 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | ||||||| ||||| || ||||| ||| | ||||| Sbjct 11931 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 11989 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 11990 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12049 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || |||| || ||| |||| || | || ||| Sbjct 12050 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 12098 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | | Sbjct 12099 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12158 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | ||||||| ||||| || ||||| ||| | ||||| Sbjct 12159 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12217 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 12218 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12277 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||| || ||| | || || | ||||| Sbjct 12278 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGG 12325 >seq1018 Length=11520 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | | Sbjct 57 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 116 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | || |||| ||||| || ||||| ||| | ||||| Sbjct 117 GACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCA 175 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 176 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 235 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | |||||||| || ||| |||| Sbjct 236 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 271 >seq427 Length=22329 Score = 149 bits (164), Expect = 6e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | Sbjct 230 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 171 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| | || |||| ||||| || ||||| ||| | || Sbjct 170 TCGGACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGA 112 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 111 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 52 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||| | |||||||| || ||| |||| Sbjct 51 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 13 >seq482 Length=22300 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 19244 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 19185 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||||| | | |||| ||||| | ||||| | ||||| || |||||||| | ||||| Sbjct 19184 GACAGCATTGACAACG-TCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCA 19126 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||||| Sbjct 19125 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAA 19066 Query 40869 CATCCAGAAGG 40879 ||||||||||| Sbjct 19065 CATCCAGAAGG 19055 >seq61 Length=46246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 12201 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 12260 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || ||||| || ||| |||| || | Sbjct 12261 ACTCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTGCGC 12320 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 12321 GGTGGTGGC 12329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195364671760