Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq926 134 1e-26 seq1018 127 2e-24 seq427 125 6e-24 seq663 123 2e-23 seq482 98.7 9e-16 >seq926 Length=12678 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | |||||||| || || |||||||| ||||||| ||||| || Sbjct 12083 CAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 12024 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| || |||||||| || || || ||||| |||||||| Sbjct 12023 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 11964 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| || || || | |||| | ||||| ||| || || | || | ||| Sbjct 11963 CTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 11904 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || || || || ||||||||| Sbjct 11903 CTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 11870 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| ||||||| ||||| || Sbjct 11855 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 11796 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| || |||||||| || || || ||||| |||||||| Sbjct 11795 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 11736 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| || || || | |||| | ||||| ||| || || | || | ||| Sbjct 11735 CTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 11676 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || || ||||||||||| Sbjct 11675 CTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | |||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 12308 CACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 12249 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| || |||||||| || || || ||||| |||||||| Sbjct 12248 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTG 12189 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || || | |||| | ||||| ||| || || | || | ||| || Sbjct 12188 AATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 12129 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || || || ||||||||| Sbjct 12128 GCCGGTCAGCGTCTTGACGAAGATCTGCATG 12098 >seq1018 Length=11520 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| |||||| Sbjct 283 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 224 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 223 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 164 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| ||| || || || || | |||| | ||||| ||| || Sbjct 163 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 104 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 103 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 56 >seq427 Length=22329 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| |||||| Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| ||| || || || || | |||| | ||||| ||| || Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 180 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||| ||||||||||| || || || || |||||||| Sbjct 181 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq663 Length=23881 Score = 123 bits (136), Expect = 2e-23 Identities = 302/455 (66%), Gaps = 2/455 (0%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || ||| |||| ||| ||||| ||||| ||| || Sbjct 21278 GCGCATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 21337 Query 132977 CACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAA 133036 | | | || || ||||||| | || ||||| |||||||| ||| | Sbjct 21338 GAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTA 21397 Query 133037 AGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTT 133096 | |||||||||| | || || | | |||| ||||||||||| ||||||| Sbjct 21398 GGCGCCACGGTCGGCCGACAGGTCCAGCACTGACTTCTGCTTGATCTCCCACACCGTCTT 21457 Query 133097 GAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGC 133156 | | | |||||| | | || || | | | ||||||||||| || ||| Sbjct 21458 GTACTTCTCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAACCACCGTCGTT 21517 Query 133157 CAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAG 133216 || ||||| ||||| | ||| || || | ||| | | ||||| ||| | || | || Sbjct 21518 CAGAATCTGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATCAGCTCCTTCATCAG 21577 Query 133217 ATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACG 133275 |||| ||| || | | || |||||||| || || || || | | || | || |||| Sbjct 21578 GTACTTGTTAACGATCGTG-AACTCGCCAGCAAGCACACGACGGTTGTACATGTTGGACG 21636 Query 133276 TGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGT 133335 || | || |||| ||| ||||||||||| | ||||| || || | ||||| |||||| Sbjct 21637 TGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATGG 21696 Query 133336 ACGCCACCAACAAAGAGTTTCTTACGCCGTACTTG 133370 ||||||| || ||||| | | |||| |||| Sbjct 21697 GGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTG 21731 >seq482 Length=22300 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || || ||||| ||||||||||| || || ||| |||| Sbjct 19057 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 19116 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || ||||| |||||||| ||||| || || || | || Sbjct 19117 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 19176 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 19177 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 19236 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 19237 ATCTGCATG 19245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433810831673092