Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq427 143 2e-29 seq1018 140 3e-28 seq926 136 3e-27 seq482 123 2e-23 >seq427 Length=22329 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 19 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 78 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 79 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGA 138 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 139 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 198 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || ||||| |||||||| ||||| ||||| |||| Sbjct 199 CCGGTCAGCGTCTTCACGAAGATCTGCATCTTGC 232 >seq1018 Length=11520 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 265 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 206 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 205 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGA 146 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 145 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 86 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 85 CCGGTCAGCGTCTTCACGAAGATCTGCATG 56 >seq926 Length=12678 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 11851 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 11792 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 11791 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGA 11732 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 11731 ATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 11672 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| ||||| || || || ||||| ||| Sbjct 11671 CCGGTCAGCGTCTTGACGAAAATCTGCATCTTG 11639 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| || ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 12079 ACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 12020 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 12019 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGA 11960 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 11959 ATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 11900 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| || ||||| |||||| Sbjct 11899 CCGGTCAGCGTCTTGACGAAGATCTGCATG 11870 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| || ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 12307 ACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 12248 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 12247 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGA 12188 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 12187 ATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 12128 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| || ||||| |||||| Sbjct 12127 CCGGTCAGCGTCTTGACGAAGATCTGCATG 12098 >seq482 Length=22300 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| ||| ||| |||| || || || || |||||||| | Sbjct 19055 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 19114 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | || ||||||||| ||||| ||||| || Sbjct 19115 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 19174 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| |||||| |||| || || |||||||||||||| |||||||||| Sbjct 19175 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 19234 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 19235 AGATCTGCATG 19245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395057379762721