Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq450 141 8e-29 >seq450 Length=22763 Score = 141 bits (156), Expect = 8e-29 Identities = 394/599 (66%), Gaps = 24/599 (4%) Strand=Plus/Minus Query 20923 GCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTC 20982 |||| || || |||||||| || || || ||||| || | || | || || | Sbjct 20121 GCAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACTCGC 20062 Query 20983 CCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGT 21042 | || |||| || | || || || | || ||| || || ||||||||||| |||| Sbjct 20061 CAGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAATGT 20002 Query 21043 TAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCC 21102 | || || || || || |||||||| || || | |||||||| ||| || || ||||| | Sbjct 20001 TGAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCTCTC 19942 Query 21103 CCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGT 21162 | ||| |||||||||||||| || | ||| || || || || |||||| ||| | Sbjct 19941 CATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTGAGAT 19882 Query 21163 CCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCG--TGGG-------GCCGCCTGT 21213 | || |||||||| || | | ||||| || || ||| |||| || || ||| Sbjct 19881 CAGCAGGGTTCCAGGCCGAAAGTACGATCCGGCGGTCGGTTGGGTTCGTTCGCAGCTTGT 19822 Query 21214 TAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGG 21273 ||| ||| | | ||| || || || || ||| | ||| | || | Sbjct 19821 GAAT---------CACCTCAGCCAGTTGATCTACACCTTGATCAGTGTAATCCGCATGCA 19771 Query 21274 CCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC 21333 || |||| | || |||||||| | |||||||||||| ||||||||||| || || | Sbjct 19770 TGTCCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCAC 19711 Query 21334 CCTCGCGGCGGTCCCCGAAGCCCTGCGCC--GCCAAAAAGGCGCGGGACCCGTGCGCGTC 21391 | | | || || | |||||| || | ||||| | | || || || | |||| Sbjct 19710 CAACTTCTC-GTGCCTGCAGCCCT-CGACTATCCAAATACTCACGCGATCCATTGCCGTC 19653 Query 21392 CCAAATTTTTACGCCGCGGCGCGACAG-TTCGGTGGAGTCGGTGGAGCCCCTGATAAACC 21450 ||| || | | | | || ||| | | | | | |||| ||| ||||| |||| Sbjct 19652 CCAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACT-GGTGTCGCCACTGATGAACC 19594 Query 21451 ACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC 21509 |||| | ||||||| | || || | ||| ||||| || ||||| || | ||| || ||| Sbjct 19593 ACAGAAGCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAAC 19535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427756704762480