Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq130 190 3e-43 seq663 156 6e-33 seq188 113 7e-20 seq450 96.9 5e-15 seq324 89.7 8e-13 >seq130 Length=37012 Score = 190 bits (210), Expect = 3e-43 Identities = 612/917 (67%), Gaps = 52/917 (6%) Strand=Plus/Minus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 || || ||||| |||| | || ||| | ||| | |||||||| ||||| |||| ||||| Sbjct 16089 CTCTTCCCCATTCAGG-AGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCTTCCTT 16031 Query 125054 TTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 ||||||| ||| ||| | ||||| || || | |||| | || |||| || | | | Sbjct 16030 CTGGACGGCCGAGGAGCTGGATCTCGTGCACG-ACCTCAAGGACTGGGTGAACC---TCA 15975 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || | ||||| | || || |||| | ||||||||||||| | | ||||| | Sbjct 15974 CGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCCTTCTTTGCTGCCAGTGATGGTA 15915 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTC 125230 | |||||||| || || | || || || ||| ||| || | || |||| || Sbjct 15914 TAGTCAACGAGAACTTG--GCCATGAACTTCAGCAACGAGGTGCAAGTGCCTGAGGC-TC 15858 Query 125231 G-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | ||||| ||||| ||||| ||| || |||||| | |||||||| ||||||| | Sbjct 15857 GCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGC 15798 Query 125290 TGATTGACATGTACATTCGCGA--TCCGCAACGTAAACACA--TGCTCTTTAACGCAATC 125345 | ||||||| |||||| || | | | | |||| || |||| | || || Sbjct 15797 TTATTGACACGTACATCAAGGACATTGTCGA-GAAAACCCACCTGCTGCGT---GCCATT 15742 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | |||| | | | || || || | |||| | | |||| ||| | Sbjct 15741 GAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCCGCGC 15682 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| || ||| | || | ||| |||| || || || || ||||| |||||||| ||| Sbjct 15681 GTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCTTCTCG 15622 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || ||| ||||||| |||||||||||||| || |||||||| || || | Sbjct 15621 GGCTCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTT 15563 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 | |||||| | || || ||||||||| | ||| ||||| ||| || ||| Sbjct 15562 CTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTCATGTA 15503 Query 125585 TCGCAACTATCTGCGTCC-CGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATT 125639 ||| ||| ||| | || ||| ||| || ||| || | | | || Sbjct 15502 CTCCAAG---CTG-GTCAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATC 15457 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCAT 125698 || || || ||| ||| || || ||||| | ||| || || || ||| ||| | Sbjct 15456 GTGCGTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTCGAGC-T 15398 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 || |||||||||| ||| |||||| ||||||| ||||| ||||| || ||||| || Sbjct 15397 CATCGGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 15338 Query 125759 GTACGAGTTG--ATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 ||| | || | || || ||||| ||||||| |||||| || || || | ||| | Sbjct 15337 CTACTCGCTGGGAGTGTCC--AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGAC 15280 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAAC 125874 | || || || |||| ||||||||||| ||||||||| || ||||||| | || Sbjct 15279 ATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAG 15220 Query 125875 GCTACGGTGTCGGTGTC 125891 ||| |||||||| ||| Sbjct 15219 GCT--GGTGTCGGCGTC 15205 >seq663 Length=23881 Score = 156 bits (172), Expect = 6e-33 Identities = 352/517 (68%), Gaps = 18/517 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCG-CTATAGCCGTCTACTTGGAACCTTGGCACGCGGA 96934 |||||||| |||||| | ||| | || | || | ||| |||| ||||||||||| || Sbjct 22636 CAGGGCGGAGGTAAACG-CAAGGGGTCTTTCGCTATTTACCTGGAGCCTTGGCACGCAGA 22578 Query 96935 CGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAG--GCA-CGAGCCAG 96991 || ||||| || | || ||||||| ||| || | | ||| ||| || || | Sbjct 22577 TGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGG---TAACGAGTTGCATCGGGCGCG 22521 Query 96992 GGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGG 97051 |||||||| || || || ||||| || ||| ||||||||||||| || | | | ||| Sbjct 22520 CGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCCAATGG 22461 Query 97052 CTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 | | ||||| | | |||||| | | || || || | ||| |||||||| || || Sbjct 22460 CAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTGGGGTGACGA 22401 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATG 97170 ||||||| | ||| | |||||| | ||||| || || |||||| || ||| Sbjct 22400 GTTTGAGACGCTCTACGAGAAGTACGAGAAGGAGGGACGTGCTCGCAAGACGA-TCAATG 22342 Query 97171 CACGAGAACTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 ||| |||||||| ||||| | |||| || ||| | ||||| || ||| | ||| Sbjct 22341 CACAGCAACTGTGGTTTGCCATCCTTGAC-GCGCAGATTGAGACGGGTGTTCCATTCATG 22283 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 || |||||||| | | || ||||| ||||| | |||||||||| ||| || Sbjct 22282 CTGTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAAAACTTGGGCACGATC---CGC 22226 Query 97290 TC---CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || ||| ||||| ||| | | |||||| | ||||| || ||| ||| || ||| Sbjct 22225 TCCAGCAACTTGTGCTGTGAAGTGATGGAGTACACTTCTCCTGATGAGGTGGCTGTGTGC 22166 Query 97347 GTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAGG 97383 | |||| ||||| ||||| | |||||| |||| Sbjct 22165 AATTTGGCGTCGGTGGCACTGCCGATGTTTGTGGAGG 22129 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || || | |||||| | || Sbjct 21460 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCAGTGCTGGACCTGTCGGCCGACCGTGGC 21401 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||||||||| ||| |||| | || | ||||| || ||| ||| Sbjct 21400 GCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAAG 21341 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 21340 CTCACGTCCATGCACTTCTACGCCTGGAAGAAGGGACTCAAGACGGGCATGTACTA 21285 >seq188 Length=32867 Score = 113 bits (124), Expect = 7e-20 Identities = 184/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||||||||| |||| ||||||||| |||||| || || ||||| || | ||||||| Sbjct 26429 GAATCCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATAATGCGGTCGTGCGG 26488 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | | ||||||||||| |||||||| ||||||||||||||| || || Sbjct 26489 GCGCAGCAGTGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCCGAGTACGGCTGCACGTT 26548 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||||| || | | || |||| |||||||| || | Sbjct 26549 GACGCCCCACTTGTCCTCGTCCAGGCCGTAGGCCGTGAGCGCGCGCTGCTGGCACAGGAT 26608 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 26609 CTCGATCTTGTCGATCACCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 26666 Query 127681 GAGTACTTGTTGATGAGACACGA 127703 | |||||||||| |||| ||||| Sbjct 26667 GCGTACTTGTTGGTGAGGCACGA 26689 >seq450 Length=22763 Score = 96.9 bits (106), Expect = 5e-15 Identities = 277/418 (66%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 || ||| || || || ||||| ||||| || ||||||||| | || | || |||| | Sbjct 19702 GAGAAGTTGGTGACCTTGGGCCGGTGTATGGGTTCCAGTGGCGCCATTTTGGTGCCAAAT 19761 Query 70119 ATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCAT 70176 | ||| ||| | | || || | | ||| ||||| |||||| || | || | || Sbjct 19762 ACACGGACATGCATG-CGGATTACACTGATCAAGGTGTAGATCAACTGGCTGAGG-TGAT 19819 Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236 | ||| || || || ||||| || | |||||||| | | | ||||| ||||| Sbjct 19820 TCACAAGCTGCGAACGAACCCAACCGACCGCCGGATCGTACTTTCGGCCTGGAACCCTGC 19879 Query 70237 AGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACG 70295 ||| | || | ||||| || || || || ||| |||| | |||||||||| | Sbjct 19880 TGATCTCAACGAGATGGCGCTGCCGCCCTGCCACATGTTCTG-TCAGTTTTACGTTGCTG 19938 Query 70296 ATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCT 70355 |||| | | || || ||||| ||| | ||| |||||||| || ||||| || | Sbjct 19939 ATGGAGAGCTATCGTGTCAGATGTACCAGCGCTCTGCTGACATGGGACTTGGTGTGCCAT 19998 Query 70356 TTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 | |||||||| ||||| | || | ||| || | || || | | || |||||| Sbjct 19999 TCAACATTGCCAGCTACGCGCTGCTCACGAGATTGGTGGCGCAGGTGGCTGGACTGAAAC 20058 Query 70416 CGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | ||||||| | || ||||||||||| || |||||| | || ||| | || || Sbjct 20059 CTGGCGAGTTCATTCATGTTATTGGCGACGCACATGTGTATCTGAACCACGTGGAACC 20116 >seq324 Length=42121 Score = 89.7 bits (98), Expect = 8e-13 Identities = 274/418 (66%), Gaps = 22/418 (5%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||||| ||||| | | | ||||| || | || | ||||||||| ||||||||| Sbjct 14544 TTGCGGTAGAAGATCATGGCTCCACGAGGTCCACGCAGCGACTTGTGCGTCGTAGTGGTC 14485 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCA---ATCAAGCCCGCA 127218 || | || ||||| || || ||||| ||| ||||||| | |||||| | Sbjct 14484 ACCACATCGGCGTACTCGAACGGCGAAGGAACGAC---GCCCGCAGCCACCAAGCCGCTA 14428 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAG-CCGGCTGCATCGGCAATCTCTCGGAATCG 127277 ||||| || |||||||| | ||||| || | || |||| || ||||| || | || Sbjct 14427 ATGTGCGCCATATCGGCAAGCAGCACGGCGTCCTGCTG-GTCACAGATCTCGCGCATGCG 14369 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 ||||| | | | |||| || ||| |||||||| | || || |||| ||| Sbjct 14368 CGCGTAGTCAATGTGACGAGAGTAAGCACTCGTGCCGGCCACAATGAGTTTAGGACGGAA 14309 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGT-CTGAGGATCCACCT 127396 | || ||| | ||| | | ||||| | |||||| || || | |||| Sbjct 14308 CAACGCCGCTGTCTTCTCCAGTCCGTCGTAGTCAATGAGTCCCGTGCTCTCG-TCCAGAC 14250 Query 127397 TGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGA---CACGTTGC---------GGA 127444 ||| |||||||| ||||| |||| || || || || | |||| || Sbjct 14249 GGTAGGGCATGCTCTCGAAGAAGATGGACGTGGCCGAGATCTTCTTGCGGCCGAGCTGGT 14190 Query 127445 ATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 | ||||||| ||||||||| |||| |||||| || || |||| || | ||||||| Sbjct 14189 AGCCGTGCGACAGGTGGCCGCCGTGGGGCAGGTCCAGCGCCATAATGCGGTCGTGCGG 14132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741024916748760