Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq13 132 4e-26 >seq13 Length=65522 Score = 132 bits (146), Expect = 4e-26 Identities = 184/255 (72%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 5591 ATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGC-CGAAGTTGAA 5649 || |||||||| || ||||| || ||| || ||| || || | | || |||||| Sbjct 47048 ATGAGCTGCGCAATGCGGTCCCCGCGCTTAACAGGGAAGTC-TTCAGCCGCGTGGTTGAA 47106 Query 5650 CAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGAT 5709 ||| | |||||||||||||||||||||||||||||| || || || ||||| |||||| Sbjct 47107 CAGAATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATGACTCCGGCGCCAGTGTCGAT 47166 Query 5710 GAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCGGGAAG 5769 ||| | ||| | ||| ||||| ||||| || ||||| ||| ||||||| || ||||| | Sbjct 47167 GAACTTCTTAAGCGCAAGGCCAGAGCGAGGCGCCACCCGGGCGTAGCAGCCGTCGGGCAC 47226 Query 5770 CTGTATCTGCAGGTCCGTGAACACCACTCGCCGACCGCCCGCAGGGACGATGCAGTCGCA 5829 || ||||||||| || | | | ||||| ||||||| || | |||| | Sbjct 47227 AGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCAGGGATGACGGCGTCGTA 47286 Query 5830 AGCGCTGCAGAGGTC 5844 ||| ||||||| Sbjct 47287 GGCGGCCGAGAGGTC 47301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430035001993112