Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq117 145 1e-30 seq1423 141 1e-29 >seq117 Length=38371 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 21751 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 21810 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 21811 CCGTCGCCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 21870 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| |||||||| ||| ||| |||| || | || || || || Sbjct 21871 CCGCGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 21930 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || || || |||||||| |||| || ||| | || || || || Sbjct 21931 GCACGCGCGCCGCAAAACCGTGACGGCCATGGATGTCGTGTACGCACTCAAGCGCCAGGG 21990 Query 16672 CCG 16674 ||| Sbjct 21991 CCG 21993 >seq1423 Length=7466 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 3455 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 3514 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 3515 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 3574 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || | || ||| || || Sbjct 3575 CCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 3634 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || || || ||||||| |||| || || | || ||||| || Sbjct 3635 GCACGCGCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 3694 Query 16672 CCG 16674 ||| Sbjct 3695 CCG 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071816149793