Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq130 149 8e-31 >seq130 Length=37012 Score = 149 bits (164), Expect = 8e-31 Identities = 389/588 (66%), Gaps = 13/588 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | || ||||| || ||||| |||||||| | || || || ||||| || | Sbjct 15504 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 15563 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || | Sbjct 15564 AGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 15623 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33470 | |||||||| || || |||||||||||||| | || | || || || || Sbjct 15624 AGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACGC 15683 Query 33471 GC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 || ||| | | |||||| | ||||| | ||| ||||| | ||||| || || || | Sbjct 15684 GCGGGTC--GCA-CCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCT 15740 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | |||||| | || | | |||| || | | || || | || || || || | | Sbjct 15741 CAATGGCACGCAGCAGGTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGCA 15800 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | |||| ||||| || ||||| || ||||| ||||| || |||||||| || | || Sbjct 15801 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAG 15860 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCC 33707 |||| | | || || || | | || |||| ||||| || || || ||||| || Sbjct 15861 CCTCAGGCACTTGCACCTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTGACTATACC 15918 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 |||||||| ||||| || |||| || || || || || | |||| || || Sbjct 15919 ATCACTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAG 15978 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 || ||| || |||| || | | ||| | || || | ||||| || || || Sbjct 15979 GTTCACCCAGTCCTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAGC 16038 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||| ||||| || ||||| | ||| | ||| | | || || ||||| Sbjct 16039 CTCGGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAA 16086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622918380905160