Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq663 297 5e-75 >seq663 Length=23881 Score = 297 bits (328), Expect = 5e-75 Identities = 880/1348 (65%), Gaps = 13/1348 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||||||||| || | | ||| ||||| || | ||| || |||| || Sbjct 22906 TTCACGCACGCCACGCCCACGCTCTTCAACGCTGGCACGCCACGTCCCCAATTGTCCTCG 22847 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | || ||| ||||||| || || ||||| || | |||||||| ||| | Sbjct 22846 TGCTTCTTGCTGGCTATGCAGGACGACTCGATTGAGGGCATTTACGACACACTGAAGCAG 22787 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| || || |||||||| | || ||||| | ||||| Sbjct 22786 TGTGCCTGCATCTCCAAGTGGGCTGGAGGAATTGGCATTAGTATGCACAACATCCGTGCC 22727 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| || ||||| || | || ||||| | | |||||| | || Sbjct 22726 ACCAACAGCTACATCCGAGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGTTGCGG 22667 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || ||||||| | ||||| |||||||| ||||| || ||||| ||| | || Sbjct 22666 GTGTTTAACGATACTGCTCGCTACGTGGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTC 22607 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || || |||||| || || ||| | |||||||| | || | || || ||| Sbjct 22606 GCTATTTACCTGGAGCCTTGGCACGCAGATGTGTTTGAGTTCTTGGACTTGCGCAAGAAC 22547 Query 363907 ACGGGAAAAGAG--GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || ||| | || || || || || ||||||| || |||||||| | || | Sbjct 22546 CACGGTAACGAGTTGCAT--CGGGCGCGCGACTTGTTCTACGCCCTTTGGGTCCCCGATC 22489 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| || | || ||| | || ||||| | ||| || Sbjct 22488 TGTTCATGAAGCGTGTGGAAGCCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTC 22429 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || | ||| ||||||||||| | || | || ||||| ||||| || || Sbjct 22428 CTGGACTCTACGAGTGCTGGGGTGACGAGTTTGAGACGCTCTACGAGAAGTACGAGAAGG 22369 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 ||||| ||||| ||||| || |||||| | || |||||||||||| | || ||| Sbjct 22368 AGGGACGTGCTCGCAAGACGATCAATGCACAGCAACTGTGGTTTGCCATCCTTGACGCGC 22309 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||||||||| || || | ||| ||||||| || | ||||||||||| |||| Sbjct 22308 AGATTGAGACGGGTGTTCCATTCATGCTGTACAAGGACGCAGCTAACCGCAAGTCGAACC 22249 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 |||| || | || || || | |||||| | || || | || || ||||| Sbjct 22248 AGCAAAACTTGGGCACGATCCGCTCCAGCAACTTGTGCTGTGAAGTGATGGAGTACACTT 22189 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG 364324 |||| || ||| || || || || | |||||| | || || ||| |||||| | | Sbjct 22188 CTCCTGATGAGGTGGCTGTGTGCAATTTGGCGTCGGTGGCACTGCCGATGTTTGTGGAGG 22129 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCG 364384 | ||| || || || | | ||||| |||||| | | || |||| || Sbjct 22128 ACGGTGTGTTCAACTACAAAAGGTTGTATGAAGTAACCAAGGTGGTGACGCGCAACCTGA 22069 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| |||||| || || || || || | || || || || || ||||| Sbjct 22068 ACAAGGTGATCGACGTCAACTACTA-CCCGGTCGTAGAGGCGCGCAAGTCGAACATGCGC 22010 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || || || | ||| ||||||| || || || ||||| | || || | | || Sbjct 22009 CACCGTCCCGTGGGTATTGGTGTTCAAGGTCTGGCTGATGCGTTCATCCTTATGAACTAC 21950 Query 364504 GCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 || ||||| || | | || |||| | || ||| | ||||| || || || || | Sbjct 21949 GCGTTTGA-GAGCGAGCAGGCACGTGAGTTGAACAAGAACATCTTCGAGACGATCTACTA 21891 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 || | ||| | ||| || | || || ||| ||| |||| | Sbjct 21890 CGCTTCTATGGAGACGTCGATGGAGATTGCCAAGGAGTTGGGCCCCTACGAGACTTTCCA 21831 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 ||| || || |||| |||||||| || | ||| |||||| || || || Sbjct 21830 GGGCTCGCCGGCCAGCAAGGGTGTTTTCCAGTTCGACATGTGGGGTGTCACTCCTTC-GT 21772 Query 364683 CCG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACT 364738 ||| ||| | |||| | |||| || || | ||||| ||| |||||||| Sbjct 21771 CCGGACTTTGGGATTGGGCTGCGCTGAAGGAGAATGTGATCAAGCACGGTCTTCGCAACT 21712 Query 364739 CCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGT 364798 | || | || |||||||| |||||||||||||| |||||| | || |||||||||| Sbjct 21711 CGCTGCTGGTGGCCCCCATGCCGACGGCTTCTACTGCTCAGATCTTGGGCAACAACGAGT 21652 Query 364799 GCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGG 364858 |||| || | || ||| | || || || || ||| | || || || || Sbjct 21651 CTATCGAGCCCTACACGTCCAACATGTACAACCGTCGTGTGCTTGCTGGCGAGTTCACGA 21592 Query 364859 TAGTTAATAAGTACCTAGTCAAGGATCT 364886 | ||||| |||||||| | ||||| || Sbjct 21591 TCGTTAACAAGTACCTGATGAAGGAGCT 21564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303291796194182