Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq663 196 5e-45 seq926 150 2e-31 seq1018 145 7e-30 seq427 143 3e-29 seq482 116 3e-21 seq61 114 1e-20 >seq663 Length=23881 Score = 196 bits (216), Expect = 5e-45 Identities = 949/1480 (64%), Gaps = 42/1480 (3%) Strand=Plus/Plus Query 145028 AACTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACA 145087 |||| ||||| || | || | ||||| || |||| | |||||||| || | |||| Sbjct 21555 AACTCGATCAGCTCCTTCATCAGGTACTTGTTAACGATCGTGAACTCGCCAGCAAGCACA 21614 Query 145088 CGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGA 145147 ||||| |||| ||| |||||| |||| || | ||||||||| ||||||| ||| ||| Sbjct 21615 CGACGGTTGTACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGA 21674 Query 145148 GCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTG 145207 || || | || || |||||| ||||||| | || ||||| || |||||||| | Sbjct 21675 GCAGTAGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATC 21734 Query 145208 ATGTCTTCCTTTAGCGTACCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATG 145264 | | ||||| |||| | |||||||||| || || | || | || |||||||| Sbjct 21735 ACATTCTCCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAGGAGTGACACCCCACATG 21794 Query 145265 TCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAA 145324 ||| |||| |||| |||| |||||| || ||| || || | ||| |||| | Sbjct 21795 TCGAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCAAC 21854 Query 145325 GTTTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 ||||| | ||| || | || ||||| || || | || || |||||| || | Sbjct 21855 TCCTTGGCAATCTC-CATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 21913 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATC 145443 | |||| | | || | |||||||| ||| | || || | || ||||| Sbjct 21914 CTTGTTCAACTCACGTGCCTGCTCGCTCTCAAACGCGTAGTTCATAAGGATGAACGCATC 21973 Query 145444 GGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGA 145503 || || || || | || | || | ||| || || |||||| | | | |||| Sbjct 21974 AGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCCTC 22033 Query 145504 CTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTG 145562 ||| || || | | | || |||||| | || |||| ||| ||| || ||||| | Sbjct 22034 TACGACCGGGTAGTAGTTGAC-GTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTTGG 22092 Query 145563 TAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGA 145622 | | | |||| ||| ||| ||| | | || || || | || | || | Sbjct 22093 TTACTTCATACAACCTTTTGTAGTTGAACACACCGTCCTCCACAAACA-TCGGC-----A 22146 Query 145623 CGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATC 145681 || | |||||||||||| || || ||| ||| || || | | |||| | | | Sbjct 22147 GTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAG-TGTACTCCATCACT 22205 Query 145682 TCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTG 145741 || |||||| ||||| | ||| || |||| |||||||| || || | ||| Sbjct 22206 TCACAGCACAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTTA 22265 Query 145742 CACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AA 145799 ||||||||||| |||||| | || | || ||||| | ||||| || | ||| | Sbjct 22266 GCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCA 22325 Query 145800 AACGGTGCAAGTCCTGCGCA-CGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 ||| || | ||| ||| | | | ||| | | || ||||| | ||||| ||| Sbjct 22326 AAC--CACAGTTGCTGTGCATTGATCGTCTTGCGAGCA-CGTCCCTCCTTCTCGTACTTC 22382 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 ||||||| ||||||| || ||| |||| ||| | || || ||| | ||||| Sbjct 22383 TCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTGGGG 22442 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||| ||| ||||| | || |||| ||| |||| ||| || ||||| Sbjct 22443 CAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGACCCAA 22502 Query 145979 AGCGCGTACATCAAGTCGCGCG--CTTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAA 146035 || ||||| | ||||||||||| | ||||| ||| ||| ||| | || ||| Sbjct 22503 AGGGCGTAGAACAAGTCGCGCGCCCGATGCAA--CTCGTTACCGTGGTTCTTGC-GCAAG 22559 Query 146036 T-TAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTT 146094 | ||| || | | | | || |||||||| || || | || | |||| | || || Sbjct 22560 TCCAAGAACTC-AAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCCCTT 22618 Query 146095 TCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||||| || ||||||||||||| || | | | |||||| || |||| |||||| Sbjct 22619 GCGTTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGG 22678 Query 146152 CTCGACGCCGCTGGCTACGCCGTT----CGTAGAGTTTATTCTGGTGCCGCGGGAGCGCA 146207 || ||| ||| |||||| | | | | || ||| || | || | || | Sbjct 22679 GATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTA-GCTGTTG--GTGGCA-CGGA 22734 Query 146208 CGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGA 146267 | || | | | | ||| | || || | ||||||| || ||| || | | Sbjct 22735 TGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCA 22794 Query 146268 GCGTCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACA 146327 | || ||||| ||||| ||||| ||| | || | |||| ||||||||| ||| Sbjct 22795 GTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACA 22854 Query 146328 TCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTC 146387 || | ||||| || || ||| | ||| || | |||||||| || | || Sbjct 22855 ATTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCT 22914 Query 146388 GGCTCATCATCCGATACGTTTCGATAG-CGTCTTGAATGTCGTCGCCATGAATGCCCAAA 146446 || ||| | | ||||| || | | || |||| |||||| || ||||| | Sbjct 22915 GGGACATGAGCTCGTACGTCTCCAAGGCCGCCTTG-ATGTCGCTCTTGTGGATGCCTAGC 22973 Query 146447 GCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTT 146486 || |||||||||| ||| || || ||||||||| |||||| Sbjct 22974 GCCACGCGCATGATCATCTGCTGCGGCCGCTCCACCACTT 23013 >seq926 Length=12678 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||||||||||| || |||||||| ||||| Sbjct 11870 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 11811 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 11810 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11751 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||||||||||||| | || | | || | | ||| | Sbjct 11750 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 11691 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || ||||| || || || |||||||||||||| Sbjct 11690 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | || |||||||| || |||||||| ||||| Sbjct 12098 GCCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCT 12039 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 12038 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11979 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||||||||||||| | || | | || | | ||| | Sbjct 11978 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 11919 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || ||||| || || || ||||| ||||||||| Sbjct 11918 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 11870 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||| ||||| | || | || |||||||| || |||||||| |||||| Sbjct 12325 CCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 12266 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 12265 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 12206 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||||||||| | || | | || | | ||| | | Sbjct 12205 ATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 12146 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| ||||||||| Sbjct 12145 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12098 >seq1018 Length=11520 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||||||||| | || | ||||||||||| || |||||||| |||||| Sbjct 283 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 224 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 223 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 164 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || |||||||||| | || | | || | | ||| | | Sbjct 163 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 104 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| ||||||||| Sbjct 103 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 56 >seq427 Length=22329 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||||||||| | || | ||||||||||| || |||||||| |||||| Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || |||||||||| | || | | || | | ||| | | Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 180 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| |||||||| Sbjct 181 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq482 Length=22300 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || || ||||| |||||| ||||||||||| ||| ||| Sbjct 19055 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 19114 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || ||||| ||||| ||||| |||||||||||||| | | Sbjct 19115 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 19174 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 19175 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 19234 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 19235 AGATCTGCATGA 19246 >seq61 Length=46246 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||||||||| | || | ||| |||||||| || |||||||| || | Sbjct 12325 CCACCGCGCAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 12266 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 12265 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12206 Query 131128 ATTCCT 131133 |||||| Sbjct 12205 ATTCCT 12200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471990963507840