Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015-
10-14] 3,701 sequences; 37,340,450 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq926 109 5e-19
seq1018 107 2e-18
seq427 105 6e-18
>seq926
Length=12678
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | || || | || | ||| || || || || |||||||| |||
Sbjct 11872 ATGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 11813
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| || || || || || || || || ||| |||| || ||||| ||||| ||
Sbjct 11812 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 11753
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||| || || || | | || | | ||| | | ||
Sbjct 11752 GGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCC 11693
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||||| || | ||| ||||||||||| || || || |||||||||||
Sbjct 11692 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | || || | || | ||||| || || || |||||||| |||
Sbjct 12100 ATGCCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCG 12041
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| || || || || || || || || ||| |||| || ||||| ||||| ||
Sbjct 12040 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 11981
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||| || || || | | || | | ||| | | ||
Sbjct 11980 GGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCC 11921
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
||||||| || | ||| ||||||||||| || || || || |||||||||
Sbjct 11920 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 11870
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || || || |||||||| ||||||| || || || || || || || ||
Sbjct 12295 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 12236
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||| || ||||| ||||| || ||||||||||| ||||| ||| || || ||
Sbjct 12235 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTG 12176
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | | ||| | | || ||||||| || | ||| ||||||||||| ||
Sbjct 12175 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 12116
Query 114366 TTTACAAAAATCTGCATG 114383
|| || || |||||||||
Sbjct 12115 TTGACGAAGATCTGCATG 12098
>seq1018
Length=11520
Score = 107 bits (118), Expect = 2e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||| || || || || |||||||| ||||||| || || || || || || || ||
Sbjct 254 CGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCC 195
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| |||| || ||||| ||||| || ||||||||||| ||||| |||||| || ||
Sbjct 194 GGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTT 135
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | || | | ||| | | || ||||||| || | ||| ||||||||||| ||
Sbjct 134 GACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGT 75
Query 114365 TTTTACAAAAATCTGCATG 114383
|| || || |||||||||
Sbjct 74 CTTCACGAAGATCTGCATG 56
>seq427
Length=22329
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||| || || || || |||||||| ||||||| || || || || || || || ||
Sbjct 30 CGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCC 89
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| |||| || ||||| ||||| || ||||||||||| ||||| |||||| || ||
Sbjct 90 GGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTT 149
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | || | | ||| | | || ||||||| || | ||| ||||||||||| ||
Sbjct 150 GACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGT 209
Query 114365 TTTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 210 CTTCACGAAGATCTGCAT 227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420115449444012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |