Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq130 376 5e-99 seq663 215 1e-50 >seq130 Length=37012 Score = 376 bits (416), Expect = 5e-99 Identities = 597/844 (71%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| ||||||||| | || || | | ||| Sbjct 16056 ATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTGGATCTCGTGCACGAC 15997 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | ||||| | || | || ||||| ||| |||| || | |||||| Sbjct 15996 CTCAAGGACTGGGTGAACCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCC 15937 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 ||||| || ||| ||| || |||||||| |||||| |||||| | |||| || ||| Sbjct 15936 TTCTTTGCTGCCAGTGATGGTATAGTCAACGAGAACTTGGCCATGAACTTCAGCAACGAG 15877 Query 42489 GTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 ||||| || | | ||||| ||||||||||||||||||||||| ||||| |||||| | || Sbjct 15876 GTGCAAGTGCCT-GAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 15818 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| ||||||||| | ||||| | ||||||||||| ||| |||||| | Sbjct 15817 CTCGGAGGTGTACTCG---CTGCTTATTGACACGTACATCAAGGACATTGTCGAGAAAAC 15761 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | ||| | ||||| ||||| || || || || ||||||| || |||||||||| Sbjct 15760 CCACCTGCTGCGTGCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCT 15701 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGC---GAGAGGCTGGTAGCCTTTACCG 42720 ||| ||| ||| |||| || ||| | | || ||||| | |||||| | | Sbjct 15700 CAAGTGGTGCGA----CCCGCGCGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTG 15645 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-G 42779 | || ||||| ||||||||||||||| ||||| ||||||||||||||||||| || | Sbjct 15644 CAGTGGAGGGTATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTG 15585 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || ||||| || || | |||||||||||| ||||||||| | |||||||| |||| Sbjct 15584 GTCTC-ATGCCTGGTCTAAGCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCAC 15526 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | |||||| ||||||||| ||| ||| | | ||| |||||| || || || Sbjct 15525 ACGGACTTCGCCTGCCTCATGTACTCCAAGCTGGTCA---ACAAGCTGCCGGAGAGCCGC 15469 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT-CACGCAGTCGCT 42958 || | | ||| | || || |||| ||||||| | |||||| | | || | ||||| Sbjct 15468 GTGCACGAGATCGTGCGTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCG-ACTCGCT 15410 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 || || || ||||||||||| | ||||||||| ||||||| ||| ||| || Sbjct 15409 CCCTGTCGAGCTCATCGGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGC 15350 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 |||| ||| || | | | |||| | | |||||||| | ||| ||||| Sbjct 15349 TGACCGTCTGCTCTACTCGCTGGGAGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGA 15290 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 || ||||| | |||||| || |||||||||||||||| ||||||||||| || | ||| Sbjct 15289 CTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGA 15230 Query 43139 CTAC 43142 ||| Sbjct 15229 GTAC 15226 >seq663 Length=23881 Score = 215 bits (238), Expect = 1e-50 Identities = 1069/1682 (64%), Gaps = 74/1682 (4%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || |||||||||||| ||||||||||| | |||||||| || |||||||| ||| || Sbjct 21281 CATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAG 21340 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | || | |||||| | | || |||||| ||||| ||||| Sbjct 21341 CTTGCTGATGGTC------GGGTCGGCGATGTG------GATGTTGAGCGACTGACTCTG 21388 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | | | ||| |||| || || || | || | | | |||||| ||||| Sbjct 21389 GCAAATGTAGG-CGCCACGGTCGGCCGACAGGTCCAGCACTGACTTCTGCTTGATCTCCC 21447 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAAC-CCTTCGATGTTCTGCACCGAG 244012 || |||||||||| | ||||| || || |||| ||||| | |||||||| || Sbjct 21448 ACACCGTCTTGTACTTCTCCTTGACGTTGTCCGGGATGGCCTTC-ACCTTCTGCACGGAA 21506 Query 244013 CCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAG 244071 || || | | | ||| |||| | | | |||| | |||||| || || || Sbjct 21507 CCACCGTCGTTCAGAATCTGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATC-AG 21565 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | ||| | ||||| | |||| || | | ||||| || | ||||| || || | ||| Sbjct 21566 CTCCTTCATCAGGTACTTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTA 21625 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| || |||||||| ||| ||||||||| ||||| || || || Sbjct 21626 CATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGC 21685 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCT 244251 ||||||||||| | ||||||||| ||| | | |||||| | ||| | | ||| Sbjct 21686 CGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTT---GAT-CACATTCT 21741 Query 244252 G----AGCTCGTTCCAGTCCCACATGCCCGA-GAGGTCCTCGCGTTTGAGGCCCCACATG 244306 ||| | ||| ||||| | || || || | | ||| ||||||||| Sbjct 21742 CCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAG-------GAGTGACACCCCACATG 21794 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || ||||| | | ||||||||| | || ||||| | | ||| |||||| || Sbjct 21795 TCGAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCAAC 21854 Query 244367 CGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 || ||| | || || | | || | | ||||||||||| ||||||||||| | Sbjct 21855 TCCTTGGCAATCTC-CATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 21913 Query 244426 CTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTC 244485 |||||||| || || |||| ||| || | | | ||| | ||||| | || Sbjct 21914 CTTGTTCAACTCACGTGCCTGCTCGCTCTCAAACGCGTAGTTCATAAGGATGAACGCATC 21973 Query 244486 GGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGC 244542 ||||| || || || || || || | ||| | ||| ||| |||| || |||| | Sbjct 21974 AGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCCTC 22033 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 | || || ||||| ||||| |||||||||||||||| |||||||| || | || Sbjct 22034 TACG---ACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTT 22090 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 | || || || | | ||| | || | | ||||| Sbjct 22091 GGTTACTTCATACAACCTTTTGTAGTTGAACACACCG---TCCTC--------------- 22132 Query 244663 CACAAAC-TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 ||||||| ||| || || || |||| ||||| || |||||||| || | | Sbjct 22133 CACAAACATCGGC-AGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAG 22191 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| | | || ||| | ||| ||| | ||| ||||||| || || || | Sbjct 22192 TGTACTCCATCACTTCACAGCACAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGT 22251 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 | |||||| ||| ||||||||||| |||||||| || | || ||||| | ||| | Sbjct 22252 TCGACTTGCGGTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCG 22311 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 || | |||| | ||| || | | || |||| |||| ||||||| ||||| Sbjct 22312 CGTCAAGGATGGCAAACCACAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCT 22371 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGG 244960 |||||| ||| || | ||| |||||| |||||| ||||| || || || | Sbjct 22372 TCTCGTACTTCTCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAG 22431 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 | | ||||| | | |||||||| ||| | | | || | || |||||| || Sbjct 22432 CTTCA-TTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGA 22490 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 ||||||| ||| ||||| | ||| | ||| | | || ||| || || |||| Sbjct 22491 TCGGGGACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTC 22550 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 || | || ||||| || ||||| || || ||||||| ||||||| ||| | ||||| Sbjct 22551 TTGCGCAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAA 22610 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGAT 245196 | || || || || |||||||||| | | ||||| |||| || | Sbjct 22611 GACCCCTTGCGTTTACCTCCGCCCTGGTCCA----CGTAGCGAGCAGTATCGTTAAACAC 22666 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 |||| | || | ||||| || || |||||||||||| ||||||| | | Sbjct 22667 CCGCAACATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGT 22726 Query 245257 GCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA 245316 | | | || |||| || ||||| | ||| || || |||||||||| ||| || Sbjct 22727 GGCACGGATGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACA 22786 Query 245317 GCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | ||||| |||||||| || ||| || ||| |||| ||||| Sbjct 22787 CTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCA 22846 Query 245377 GGAGGACAGCTGGGG-CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAA 245435 ||||||| ||||| | ||| | ||| | |||||| || ||||| ||||||| || | Sbjct 22847 CGAGGACAATTGGGGACGTGGCG-TGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGA 22905 Query 245436 AG 245437 || Sbjct 22906 AG 22907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944295512507760