Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq926 96.9 3e-15 seq1018 93.3 3e-14 seq427 93.3 3e-14 seq61 84.2 2e-11 >seq926 Length=12678 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 11869 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 11811 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||||||||||||| || || Sbjct 11810 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11751 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 11750 AATGCCTTCCTTGTCCTGAATTTTCTGCTT 11721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || | || ||||||||| |||||||| || || Sbjct 12097 CCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTC-GCT 12039 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||||||||||||| || || Sbjct 12038 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11979 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 11978 AATGCCTTCCTTGTCCTGAATTTTCTGCTT 11949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || | || ||||||||| |||||||| || || Sbjct 12325 CCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTC-GCT 12267 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||||||||||||| || || Sbjct 12266 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 12207 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 12206 AATGCCTTCCTTGTCCTGAATTTTCTGCTT 12177 >seq1018 Length=11520 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 283 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 225 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||||||||||||| || || Sbjct 224 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 165 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| ||| || ||||| Sbjct 164 AATGCCTTCCTTGTCCTGAATCTTCTGCTT 135 >seq427 Length=22329 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 59 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||||||||||||| || || Sbjct 60 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 119 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| ||| || ||||| Sbjct 120 AATGCCTTCCTTGTCCTGAATCTTCTGCTT 149 >seq61 Length=46246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || || || ||||||||| |||||||| || | Sbjct 12326 ACCACCGCGCAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 12267 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | || || |||| |||| ||||||||||| || ||||| |||||||| || Sbjct 12266 CAGAGTGCGGC-CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 12213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397044490128202