Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq663 320 2e-82 >seq663 Length=23881 Score = 320 bits (354), Expect = 2e-82 Identities = 1094/1689 (65%), Gaps = 63/1689 (4%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || || |||||||| || || || || || |||| ||||| ||| || Sbjct 22897 GCCACGCCCACGCTCTTCAACGCTGGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTG 22838 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||| || || |||| ||||| || ||| | ||||| | Sbjct 22837 CTGGCTATGCAGGACGACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCCTGC 22778 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || ||||| || || ||| | ||| || | ||||||| | Sbjct 22777 ATCTCCAAGTGGGCTGGAGGAATTGGCATTAGTATGCACAACATCCGTGCCACCAACAGC 22718 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || ||||| ||| | ||||| ||| || |||| ||| | ||||| || ||| Sbjct 22717 TACATCCGAGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGTTGCGGGTGTTTAAC 22658 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || ||||||||||||||||| || || | | ||||| |||||||| | || Sbjct 22657 GATACTGCTCGCTACGTGGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTCGCTATTTAC 22598 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || ||| | ||| | ||| |||| ||||||||||| ||| Sbjct 22597 CTGGAGCCTTGGCACGCAGATGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGGTAAC 22538 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | |||| | ||| | |||||||| || ||||| || || || || ||||| Sbjct 22537 GAGTTGCATCGGGCGCGCGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAG 22478 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || || || | |||||| | || || ||||||||| ||| ||||| | | Sbjct 22477 CGTGTGGAAGCCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTAC 22418 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || || | || || |||| | || | ||||| | |||| || Sbjct 22417 GA-GTGCTGGGGTGACGAGTTTGAGACGCTCTACGAGAAGTACGAGAAGGAGGGACGTGC 22359 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | ||| || |||| | | |||||| | ||| | |||| ||| | ||||| Sbjct 22358 TCGCAAGACGATCAATGCACAGCAACTGTGGTTTGCCATCCTTGACGCGCAGATTGAGAC 22299 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 |||| || | ||| ||| ||||||| | | ||| |||||| |||||||| || | Sbjct 22298 GGGTGTTCCATTCATGCTGTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAAAACTT 22239 Query 94551 CGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 || |||| |||| || ||||| || | | ||||| |||||||| || Sbjct 22238 GGGCACGATC---CGCTCCAGCAACTTGTGCTGTGAAGTGATGGAGTACACTTCTCCTGA 22182 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | |||||||| || ||| || | ||| | | || ||| || | | Sbjct 22181 TGAGGTGGCTGTGTGCAATTTGGCGTCGGTGGCACTGCCGATGTTTGTG---GAGGAC-- 22127 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTG--TGAACTTCGCGGGAAGGATGGTC 94725 | | |||| | || | || ||| |||| | | |||| |||| Sbjct 22126 ----------GGTGTGTTC-AACTACAAAAGGTTGTATGAAGTAACC---AAGG-TGGTG 22082 Query 94726 TTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 | |||||||||| ||| |||||| |||| |||||| ||| |||||| || Sbjct 22081 ACGCGCAACCTGAACAAGGTGATCGACGTCAACTACTACCCGGTCGTAGAGGCGCGCAAG 22022 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || ||| | || || || || || ||| | || || || | Sbjct 22021 TCGAACATGCGCCACCGTCCCGTGGGTATTGGTGTTCAAGGTCTGGCTGATGC------G 21968 Query 94843 ATGATGCGTCTGCCCTACGACTCTG---TCGACGCGGCGGGT---TTGAATTTGAACATA 94896 | || | | || ||||| | || ||| ||| || ||||| |||||| Sbjct 21967 TTCATCCTTATGAACTACGCGTTTGAGAGCGAGCAGGCACGTGAGTTGAACAAGAACATC 21908 Query 94897 TTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGC 94956 ||||| | || || |||| | ||| | || | | | |||| ||| | Sbjct 21907 TTCGAGACGATCTACTACGCTTCTATGGAGACGTCGATGGAGATTGCCA---AGGA-GTT 21852 Query 94957 GGGCCAC-ACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGAC 95013 ||||| | |||| | |||| || ||||| | | | |||| |||| ||||||||| Sbjct 21851 GGGCCCCTACGAGACTTTCCAGGGCTCGCCGGCCAGCA--AGGGTGTTTTCCAGTTCGAC 21794 Query 95014 CTCTGGGGTGTGAAGCCCTCG---GGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTT 95070 | |||||||| | || ||| || || | || |||| || || | |||| Sbjct 21793 ATGTGGGGTGTCACTCCTTCGTCCGGACTTTGGGATTGGGCTGCGCTGAAGGAGAATGTG 21734 Query 95071 ATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCG 95130 ||||| |||||| | ||| ||||||| |||||||||||||| ||||| || || || Sbjct 21733 ATCAAGCACGGTCTTCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCTACTGCT 21674 Query 95131 CAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGG 95190 |||||| | |||||||||||||| |||| |||| ||| |||||| |||||||| | || Sbjct 21673 CAGATCTTGGGCAACAACGAGTCTATCGAGCCCTACACGTCCAACATGTACAACCGTCGT 21614 Query 95191 GTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCT 95249 ||||| || || || ||| | || | |||||| |||| | ||| |||| || | | Sbjct 21613 GTGCTTGCTGGCGAGTTCACGATCGTTAACAAGTACCTGATGAAGGAGCTGATCGAGT-T 21555 Query 95250 GGGTGTGTGG-GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGA 95308 ||| | ||| | ||| || || || | || || | || ||||| |||| Sbjct 21554 GGGCATCTGGACGCCTGAAGTTC-GCAATCAGATTCTGAACGACGGTGGTTCCGTGCAGA 21496 Query 95309 ACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC 95368 | | | || ||||| || |||||| | |||||||| |||||||||||| || Sbjct 21495 AGGTGAAGGCCATCCCGGACAACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGC 21436 Query 95369 AGCGCGTGA-TACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNN 95427 || || | | || |||| |||||| ||| || ||| ||| |||||||| Sbjct 21435 AG-AAGTCAGTGCTGGACCTGTCGGCCGACCGTGGCGCCTACATTTGCCAGAGTCAGTCG 21377 Query 95428 NNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGG 95487 || ||||| || | | | || | ||||||||| ||||||| Sbjct 21376 CTCAACATCCACATCGCCGACCCGACCATCAGCAAGCTCACGTCCATGCACTTCTACGCC 21317 Query 95488 TGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCC 95547 |||| ||||| |||||||| || ||||| || |||| | || || || ||| || Sbjct 21316 TGGAAGAAGGGACTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCTGACGCC 21257 Query 95548 ATACAGTTC 95556 || |||||| Sbjct 21256 ATCCAGTTC 21248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494700312867960