Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq663 134 1e-26 seq926 114 1e-20 seq130 113 4e-20 seq482 111 2e-19 seq1018 105 7e-18 seq427 104 2e-17 >seq663 Length=23881 Score = 134 bits (148), Expect = 1e-26 Identities = 612/961 (64%), Gaps = 17/961 (2%) Strand=Plus/Plus Query 153603 GACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCA 153661 ||||||| ||| || || ||| ||| || || | | |||||| || | || ||| Sbjct 22155 GACGCCAAATTGCACACAGCCACCTCATCAGGAGAAG-TGTACTCCATCACTTCACAGCA 22213 Query 153662 GAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTC 153721 | ||||||| | || |||||| |||||||| || ||||| || ||||| Sbjct 22214 CAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTTAGCTGCGTC 22273 Query 153722 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATG 153778 ||| | |||||| | || | || ||||| | |||| || | ||| ||||| Sbjct 22274 CTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAACCA--- 22330 Query 153779 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAG 153838 ||| | ||| || | | || ||| || ||||| ||||||| |||||| || Sbjct 22331 CAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCGTACTTCTCGTAGAG 22390 Query 153839 TCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAG 153898 |||||||||||| || |||| ||| ||| || ||| | || || || | || Sbjct 22391 CGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTGGGGCAGAACAA 22450 Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 |||| | | | ||| | || || |||||||||||| || ||||| || ||||| Sbjct 22451 ACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGACCCAAAGGGCGTA 22510 Query 153959 CATGAGGTCGCGCGCC--TTGCAA-TCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCAC 154015 | | |||||||||| ||||| || | || | ||||| || || || Sbjct 22511 GAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTTGCG--CAAGTCCAAGAAC 22568 Query 154016 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT--- 154072 | | | | || |||||||| || || | ||| | || | | || || || || Sbjct 22569 TC-AAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCGTTTACC 22627 Query 154073 TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCC 154132 ||||||||| || |||| ||| | ||| ||| || || |||| |||||| | ||| Sbjct 22628 TCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGATGCC 22687 Query 154133 GCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTT 154192 | | | ||||||||| ||| | |||| | ||| || | | |||| | Sbjct 22688 ATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGATGTTGTGCATACT 22747 Query 154193 AACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGAT 154252 || |||||| || || | |||| || ||| || || | ||| || ||| || Sbjct 22748 AATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCGTAAAT 22807 Query 154253 GCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCG 154312 ||| || || ||||| | | | |||||||| ||||| ||| ||| ||| | Sbjct 22808 GCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGACGTGG 22867 Query 154313 CGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCG 154372 ||| || || ||||| ||||| | |||||||| || | || ||| ||| | Sbjct 22868 CGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCTGGGACATGAGCTC 22927 Query 154373 GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 |||||| || | ||| | | ||| || ||| ||||| ||||| |||||||||| Sbjct 22928 GTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCTAGCGCCACGCGCATGAT 22987 Query 154433 CATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAG 154492 ||| |||||||| || || | ||| | || | || || || || | || | Sbjct 22988 CATCTGCTGCGGCCGCTCCACCACTTTGCCGTTCACGCGGAAAAGGTAGCCCCTCTCTAA 23047 Query 154493 GGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAG 154552 |||||| | ||||| || | ||| || || || | ||||| |||||||| | ||| Sbjct 23048 TGTTTTGAAGCCGAAGTAGTCGTACTCGAAGTCGCGGTCATGGATGATGGCCGAGTTGAG 23107 Query 154553 C 154553 | Sbjct 23108 C 23108 >seq926 Length=12678 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 11870 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 11811 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| || ||||| ||||| || || Sbjct 11810 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11751 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 11750 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 11691 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || ||||| || || || ||||||||||| Sbjct 11690 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 12098 GCCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCT 12039 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| || ||||| ||||| || || Sbjct 12038 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11979 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 11978 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 11919 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || ||||| || || || || ||||||||| Sbjct 11918 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 11870 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||| | || | || | | |||||||| || ||||||||||||||| Sbjct 12325 CCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 12266 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| || ||||| ||||| || || Sbjct 12265 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 12206 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 12205 ATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 12146 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || ||||| || || || || ||||||||| Sbjct 12145 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12098 >seq130 Length=37012 Score = 113 bits (124), Expect = 4e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 52651 CGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTG 52710 |||| || |||||||| | ||||||||| || | ||||||| ||||||| ||||| | Sbjct 15413 CGCTCCCTGTCGAGCTCATCGGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCG 15354 Query 52711 TGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGT 52770 |||| || |||||| | ||| || | | ||| || ||||| || |||| Sbjct 15353 TGGCTGACCGTCTGCTCTACTCGCTGGGAGTGTCCAAGATCTACAACGTCAAGAACCCGT 15294 Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 | || | ||| ||| || ||||| |||||||||||||||| ||||||||||| || | Sbjct 15293 TCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGG 15234 Query 52831 GCGAGTA 52837 ||||||| Sbjct 15233 GCGAGTA 15227 >seq482 Length=22300 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| || || || ||||||||| || || |||| ||| Sbjct 19055 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 19114 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | |||||||| ||||| || || || ||||| ||||| |||||| || || | | | Sbjct 19115 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 19174 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | | |||||| || |||||| || | ||| | || || || ||||| || || |||| Sbjct 19175 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 19234 Query 138605 AAATCTGCATG 138615 | ||||||||| Sbjct 19235 AGATCTGCATG 19245 >seq1018 Length=11520 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 283 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 224 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| || ||||| ||||| || || Sbjct 223 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 164 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| || || || || | | || | | ||| | || |||||| Sbjct 163 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 104 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || ||||| || || || || ||||||||| Sbjct 103 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 56 >seq427 Length=22329 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| || ||||| ||||| || || Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| || || || || | | || | | ||| | || |||||| Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 180 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || ||||| || || || || |||||||| Sbjct 181 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239441660720