Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq926 143 3e-29 seq1018 141 9e-29 seq427 138 1e-27 seq663 111 1e-19 seq482 105 6e-18 seq130 98.7 9e-16 >seq926 Length=12678 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 11869 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 11810 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 11809 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 11750 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||||||||||||| ||||| ||| | ||||| ||| || Sbjct 11749 ATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCAC 11691 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||||||||| || || || ||||||||||| Sbjct 11690 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| |||| | Sbjct 12097 CCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 12038 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 12037 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 11978 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||||||||||||| ||||| ||| | ||||| ||| || Sbjct 11977 ATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCAC 11919 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 11918 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 11870 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | ||||| || | |||||||| || || || ||||| |||| Sbjct 12326 TCCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCT 12267 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 12266 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 12207 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| ||||||||||||| ||||| ||| | ||||| ||| | Sbjct 12206 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCA 12148 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 12147 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12098 >seq1018 Length=11520 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 284 TCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 225 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 224 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 165 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| || |||||||||| ||||| ||| | ||||| ||| | Sbjct 164 AATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCA 106 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 105 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 56 >seq427 Length=22329 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| || |||||||||| ||||| ||| | ||||| ||| || Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCAC 179 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||||||||| || || || || |||||||| Sbjct 180 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq663 Length=23881 Score = 111 bits (122), Expect = 1e-19 Identities = 332/507 (65%), Gaps = 13/507 (3%) Strand=Plus/Plus Query 145693 TTGCCGCACGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGT 145752 |||| | ||||||| | |||| ||| || |||||||| | || | ||| ||| Sbjct 21218 TTGCAGGTCGAGGCC-CTGCTT----GTCCACCGTGAACTGGATGGCGTCAGCTTTCGGG 21272 Query 145753 TTTGTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATG 145812 | ||||| ||||||||||| |||||||| |||| ||| | ||| ||||| ||| Sbjct 21273 CGTCCGCGCATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATG 21332 Query 145813 CTCGACATGACCGAGTACGTGG---GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGA 145869 ||| ||| | | ||| | ||||||| | || || || || ||||| Sbjct 21333 ---GACGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGG 21389 Query 145870 TCAATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCA 145928 |||| | || ||| |||||||| | || ||| | || |||| || || ||||| Sbjct 21390 CAAATGTA-GGCGCCACGGTCGGCCGACAGGTCCAGCACTGACTTCTGCTTGATCTCCCA 21448 Query 145929 TGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCC 145988 | || || | |||||||||| | || || | | | |||||||| || || Sbjct 21449 CACCGTCTTGTACTTCTCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAACC 21508 Query 145989 ATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGC 146048 | ||| || || | ||||| | ||| || || | ||| ||| || | || | Sbjct 21509 ACCGTCGTTCAGAATCTGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATCAGCTC 21568 Query 146049 CTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACAC 146108 ||| || || |||| ||| || | | |||||||| || || || || | |||| Sbjct 21569 CTTCATCAGGTACTTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTACAT 21628 Query 146109 GTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGT 146168 |||| ||| | ||||||| ||||||||||| || | ||||| || || | ||| || Sbjct 21629 GTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGT 21688 Query 146169 AGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||| |||||||||| ||||| Sbjct 21689 CGGCATGGGGGCCACCAGCAGCGAGTT 21715 >seq482 Length=22300 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || || |||||| || || ||||| || || ||| ||||| Sbjct 19057 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 19116 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||| ||||||||| |||||||||||||| |||| || Sbjct 19117 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTG-TC 19175 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 19176 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 19235 Query 127105 AATCTGCATG 127114 ||||||||| Sbjct 19236 GATCTGCATG 19245 >seq130 Length=37012 Score = 98.7 bits (108), Expect = 9e-16 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | ||||||| || || || || ||||| |||||| Sbjct 15393 GGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTAC 15334 Query 47472 CAGCTAA-AGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| ||| ||| ||||| ||| || | |||| || ||||| | ||| ||| || Sbjct 15333 TCGCTGGGAGTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGAT 15275 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||||| ||||||||||| || ||||| || Sbjct 15274 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 15227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478802144240