Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq663 232 8e-56 seq130 163 3e-35 >seq663 Length=23881 Score = 232 bits (256), Expect = 8e-56 Identities = 871/1340 (65%), Gaps = 46/1340 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||||| ||||| | |||| ||||| |||||||| || || || || Sbjct 21624 TACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAA 21683 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| |||| || || |||||| ||||| | | | ||| Sbjct 21684 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTCTCC 21743 Query 116023 TTGAGGGCGTCCCAGTCGTA--GTT--GAGCTTTGTCTCCCCCTCCCACATATCAAACTG 116078 || || || |||| || | || || | | | | ||||||| || ||||| Sbjct 21744 TTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAGGAGTGACAC-CCCACATGTCGAACTG 21802 Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC-- 116136 || | ||| | | || ||||| |||| || ||||| || |||||| | |||| Sbjct 21803 GAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCC---AACTCCTT 21859 Query 116137 GCCAATTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 | |||| | | || ||| | | |||| || || ||||| || ||| || Sbjct 21860 GGCAATCTCCATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTGTT 21919 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGA 116254 || | |||| ||| ||||||||| | || || || || |||| || | Sbjct 21920 CAACTCACGTGCCTGCTCGCTCTCAAACGCGT-AGTTCATAAGGATGAACGCATCAGCCA 21978 Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC- 116313 ||||||| ||||| | || | || || || | ||| || ||||| || || ||| | Sbjct 21979 GACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCC-TCTACG 22037 Query 116314 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 116373 || || || | || ||||| ||| | || || || || || ||||| || | | Sbjct 22038 ACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTTGGTTACT 22097 Query 116374 TCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 116432 |||| | | ||| ||| | || || || || | ||| || | || || || Sbjct 22098 TCATACAACCTTTTGTAGTTGAACACACCG-------TCCTCCACAAACATCGGCAGTGC 22150 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 | ||||||| ||| ||||||| |||||| | ||||||||| || | ||| Sbjct 22151 CACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCACTTCACA 22210 Query 116493 ACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 ||||| || || | || ||||||||||| | || || ||||| |||| Sbjct 22211 GCACAAGTTGCTGGAGCGG--ATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTTAGCT 22268 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||| ||||| |||| |||||||| | || | | || || || | Sbjct 22269 GCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAAC 22328 Query 116611 CATACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTG 116665 || | | |||| ||| | | | ||| || || ||||||| ||||||||| Sbjct 22329 CACAGTT-----GCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCGTACTTCT 22383 Query 116666 TGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGA 116724 |||||| | ||||||||| |||||| |||| ||| |||| || || || | || || Sbjct 22384 CGTAGAGCGTCTCAAACTCGTCACCC-CAGCACTCGTAGAGTCCAGGAGCTTCATTGGGG 22442 Query 116725 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 116784 ||||| | | ||| | ||| | || || ||||||||||| || || |||| ||| Sbjct 22443 CAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGACCCAA 22502 Query 116785 AGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 || || |||| | || || ||| || || | | || || || ||||| || Sbjct 22503 AGGGCGTAGAACAAGTCGCGCGCCCGATGCAACT-CGTTACCGTGGTTCTTGCGCAAGTC 22561 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 ||| || || | | ||| |||||||| || |||||||| | |||| ||||||||||| Sbjct 22562 CAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCG 22621 Query 116904 ---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960 || || |||||| || || | || || ||||||| || || | ||| || || Sbjct 22622 TTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGGGAT 22681 Query 116961 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTG 117020 ||| |||| || ||| || || || || || ||| |||| | || | ||| Sbjct 22682 GATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGATGTTGTG 22741 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 || || ||||| || || |||||||| ||||| || |||| | | || || | Sbjct 22742 CATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTC 22801 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 ||| || || || |||||||| ||| | || | | |||||| |||| ||| || Sbjct 22802 GTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGG 22861 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACA 117199 | ||| || |||||||||||||| || || || ||||| |||| | || | ||||||| Sbjct 22862 ACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGA-ACTTCTGGGACA 22920 Query 117200 TCTTATCGTAGGTCTCCAAG 117219 | ||||| ||||||||| Sbjct 22921 TGAGCTCGTACGTCTCCAAG 22940 >seq130 Length=37012 Score = 163 bits (180), Expect = 3e-35 Identities = 302/435 (69%), Gaps = 15/435 (3%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 15215 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 15274 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || || |||||||| ||| | || | | ||| || | | Sbjct 15275 ATCATGTCCATCCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAG 15334 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | ||| ||||| || | ||| |||||||||||| |||| | | |||||||| ||| Sbjct 15335 TAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCG 15394 Query 127400 ATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCG 127458 ||||| | ||| ||||||| ||| | |||| | | ||| || ||||||| || || Sbjct 15395 ATGAGCTCGACA-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACAGCGTCACG 15453 Query 127459 TACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA 127517 ||||| |||| | | | || ||| | | ||| | |||| |||| | Sbjct 15454 CACGATCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTGACCAG---CTTG--GAGTACAT 15507 Query 127518 CAG-----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 127572 || | || || ||| | |||||||||||| |||||| || |||||||||| Sbjct 15508 GAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCT 15567 Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632 ||||| ||||||||||| |||||||| | |||||| || | || || ||||| ||||| Sbjct 15568 TAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAA 15627 Query 127633 GAAGATCCCCTCCAC 127647 |||||| |||||||| Sbjct 15628 GAAGATACCCTCCAC 15642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613478817623160