Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq130 232 7e-56 seq926 145 8e-30 seq427 140 3e-28 seq1018 138 1e-27 seq482 116 4e-21 seq61 95.1 1e-14 >seq130 Length=37012 Score = 232 bits (256), Expect = 7e-56 Identities = 420/609 (69%), Gaps = 4/609 (1%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | ||| || ||||| |||| ||||||||| | | ||||| ||||| || Sbjct 15504 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 15563 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | || |||||||| || || || |||||||| || |||| | ||| ||||| Sbjct 15564 AGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 15623 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| || || || || |||| ||| || || | | | | | Sbjct 15624 AGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACGC 15683 Query 133067 TGCTGG-CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || || || ||| |||||||| | ||| || | | ||| ||||| || || || Sbjct 15684 -GCGGGTCGCACCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCTCA 15742 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTC 133185 ||||| || || || |||||| | | | ||| ||||| || || | Sbjct 15743 ATGGCACGCAGCAGGTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGCAGC 15802 Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || |||| |||||||| | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 15803 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCC 15862 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || ||| ||||| || | ||| | | ||| || |||||||| || || || Sbjct 15863 TCAGGCACTTGCACCTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTGACTATACCATCA 15922 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||| || || ||||||||||||||||||||||| |||||||||||||| | | | | Sbjct 15923 CTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGGTTC 15982 Query 133366 TCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 ||||||| | | | | || || || |||| ||||||| | ||||| || || ||||| Sbjct 15983 ACCCAGTC-CTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAGCCTC 16041 Query 133425 GGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCG 133484 ||| || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 16042 GGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCGGTT 16101 Query 133485 GGGGTTTTC 133493 |||||| || Sbjct 16102 GGGGTTCTC 16110 >seq926 Length=12678 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | Sbjct 11640 AAGATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 11699 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | |||| | || | ||||| | ||||| || || |||||| | || Sbjct 11700 TCGGACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGA 11758 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 11759 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 11818 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 11819 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 11870 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | | Sbjct 11871 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 11930 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||| | ||||| || || |||||| | ||||| Sbjct 11931 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 11989 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 11990 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12049 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || |||| ||||||||||| || | || ||| Sbjct 12050 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 12098 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | | Sbjct 12099 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12158 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||| | ||||| || || |||||| | ||||| Sbjct 12159 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12217 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 12218 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12277 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||| ||||||| ||| || | ||||| Sbjct 12278 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGG 12325 >seq427 Length=22329 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | Sbjct 230 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 171 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | |||| | || | || || | ||||| || || |||||| | || Sbjct 170 TCGGACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGA 112 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 111 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 52 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||||||||| ||||||||||| || | || || Sbjct 51 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1 >seq1018 Length=11520 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | | Sbjct 57 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 116 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || || |||||| | ||||| Sbjct 117 GACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCA 175 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 176 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 235 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| ||||||||||| || | || || Sbjct 236 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 283 >seq482 Length=22300 Score = 116 bits (128), Expect = 4e-21 Identities = 144/192 (75%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 19244 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 19185 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||||| | | |||| | || | ||||||| ||||| || || || |||||| |||| Sbjct 19184 GACAGCATTGACAACG-TCAAGCAGAAAATCCAGGACAAGGAAGGCAT-CCCGCCTGACC 19127 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||||| Sbjct 19126 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACA 19067 Query 38422 ACATCCAAAAGG 38433 ||||||| |||| Sbjct 19066 ACATCCAGAAGG 19055 >seq61 Length=46246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 12201 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCG 12259 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||| || |||||||||||||| ||||| | || ||||| ||||||||||| || | Sbjct 12260 CACTCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTGCG 12319 Query 38465 AGGCGG 38470 || || Sbjct 12320 CGGTGG 12325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149660755840