Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq700 111 1e-18 >seq700 Length=15699 Score = 111 bits (122), Expect = 1e-18 Identities = 651/1031 (63%), Gaps = 26/1031 (3%) Strand=Plus/Minus Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 ||||| ||||| |||| ||||| || || | || | || | |||||| || | Sbjct 14252 ACCTTTGGAATGCGAGTCGATCCGCCCACCAGCACCACCTCGTTCACCTGGTTCTTGGAC 14193 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAA 517810 | ||| || || || ||||| | ||||| || | | | || || || ||| Sbjct 14192 AATTTCGAGTCACGTAGAACTTGCGCGACGGGATCCATCGTCTTGCGGAAGAATTCGGAA 14133 Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 517870 || || || |||||| || | || | || ||| ||||||| || || | || Sbjct 14132 CAGAGGTCCTCGAATCGCGCACGGGTGATGGTCGAGTTAAAATCAATGCCATCTAGCAGC 14073 Query 517871 GAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929 ||||||| || || ||| | || | ||||| || | | || || || |||||||| Sbjct 14072 GAATCAATCTCTAT-GTACGCCTGCGCCGAAGTGGACAACGTCCGCTTGGCCCGTTCACA 14014 Query 517930 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT----GATTCAAATCTGTTTTATATT 517985 || || | || | || || || |||| || || || ||| | | |||| Sbjct 14013 CGCCGTACGGAGACGGCGCAAAGCAC--GCTGGTTCGCCGA--CATATCCCTGTGGTATT 13958 Query 517986 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 518045 | | |||||| || | ||| | | || ||||| || ||||| ||||||||||||| Sbjct 13957 TGCGCTTGAACTCGGCCACAAAGAACTCGACTAGACGGTTGTCAAAGTCTTCACCTCCCA 13898 Query 518046 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 518105 | | |||| || | ||||| | || | ||| | ||| || || | | | || | Sbjct 13897 AGTGCGTATCACCAGCAGTAGCCTTCACCTCGAAGATTCCTTCCTCGATCGTAAGCAGCG 13838 Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 518165 ||||||| ||||| || || | ||| || || | || | | | | | || | Sbjct 13837 ATACATCAAACGTTCCGCCGCCTAGATCGAAGATCAACACGT---TGTGCTCGCCTCCTT 13781 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 |||| || | || || |||| ||||||||| || || || ||||| || | || || | Sbjct 13780 TTTTGTCCAAGCCGTAGGCAATAGCAGCAGCGGTCGGCTCGTTAATGATACGCAGCACGT 13721 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | | ||||||||| ||| ||||| || || ||||| | || || || || ||||| | Sbjct 13720 TCAAACCAGCAATGACTCCGGCATCCTTGGTCGCTTGGCGCTGCGAGTCATTGAAATACG 13661 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345 | || || || | || |||| | |||| || || || | || ||| | | Sbjct 13660 CCGGCACCGTCACCACCGCATTCTTCACTTGCTTGCCGATGAATGCCTCTGCAATCTCGC 13601 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGATTC-AT 518402 ||| || | | | ||| || || || | || || |||| | ||| ||||| Sbjct 13600 GCATCTTGATCAGCACCATGGACGATATCTCCTCGGGCTGGAACGT--CTTCGATTCGCC 13543 Query 518403 TTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTTTAAATGGCC 518459 |||| || || | | | || || | | | | ||||| || |||| Sbjct 13542 CTTGAACTG-CACCACGACTTGCGGCTTGTCCTCGGGACCGCGCGCCACTTTGAACGGCC 13484 Query 518460 AGTATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTCTACCAATTAATCGTTT 518517 ||| || ||||| || || ||||| | || | || | | || || || ||||| Sbjct 13483 AGTGCTTGATATCCGACTG--CACTTCAGTATCCGTGAACTTGCGGCCGATCAAACGTTT 13426 Query 518518 TGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAAT 518577 ||||||| | ||| ||| | || || || |||| | || |||||||| || || Sbjct 13425 GACATCAAACACAGTGTTGTGCGCGTTCATGGCCACTTGGTTCTTCGCTGCATCGCCGAT 13366 Query 518578 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 518637 || |||| | ||| || || | || || ||||| || || || || || || ||||| Sbjct 13365 AAGTCGTTCCGACTCGGTGAAGGCTACGTACGATGGTGTCGTACGGTTGCCCTGGTCATT 13306 Query 518638 CGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAA 518697 ||||| || || || |||||||||| || || ||||| | | || || || | Sbjct 13305 GGCAATGATCTCCACGCGGTCATTTTGCCACACCCCAACACACGAATACGTCGTGCCGAG 13246 Query 518698 ATCAATACCAA 518708 ||||||||||| Sbjct 13245 ATCAATACCAA 13235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780638744188906