Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq663 199 5e-46 seq130 125 9e-24 seq96 114 2e-20 seq116 91.5 2e-13 >seq663 Length=23881 Score = 199 bits (220), Expect = 5e-46 Identities = 425/629 (68%), Gaps = 7/629 (1%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| ||||||| || ||| | || ||||| | || || | | | Sbjct 22999 CCGCAGCAGATGATCATGCGCGTGGCGCTAGGCATCCACAAGAGCGACATCAAGGCGGCC 22940 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||| ||||| ||||||| | || | |||| ||||| || || || ||||| Sbjct 22939 TTGGAGACGTACGAGCTCATGTCCCAGAAGT-TCTTCACGCACGCCACGCCCACGCTCTT 22881 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||||||||| || ||| | |||||| ||||| || ||| | | || | |||| || Sbjct 22880 CAACGCTGGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTGCTGGCTATGCAGGACGA 22821 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || || | |||||||||| ||| || | | |||||| ||||| ||||||||||| Sbjct 22820 CTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGG 22761 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 || || || || || || | || | |||| ||| || |||| || || Sbjct 22760 AGGAATTGGCATTAGTATGCACAACATCCGTGCCACCAACAGCTACATCCGAGGCACCAA 22701 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 || || |||| || || || ||| | || || ||||||| || || ||||| || Sbjct 22700 CGGCTCGTCCAATGGCATCATCCCCATGTTGCGGGTGTTTAACGATACTGCTCGCTACGT 22641 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| | || || |||||||| ||| |||| | || || ||||| |||||||| Sbjct 22640 GGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTCGCTATTTACCTGGAGCCTTGGCACGC 22581 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087 ||| | | |||||| | || ||||| ||||| ||| | ||| | ||| || Sbjct 22580 AGATGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGGTAACGAGTTGCATCGGGCGCG 22521 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 ||| | |||| ||| || ||| | || ||||| ||||||||| | || || | | ||| Sbjct 22520 CGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCCAATGG 22461 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGG 112206 ||| ||| | | || || || | | || || || |||| ||| ||| | |||||| | Sbjct 22460 CAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTG-GGGTGACG 22402 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAG 112235 ||||||| | |||||| ||||||||| Sbjct 22401 AGTTTGAGACGCTCTACGAGAAGTACGAG 22373 >seq130 Length=37012 Score = 125 bits (138), Expect = 9e-24 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 || || |||| ||| || ||||| || ||||| | || || | ||||| | Sbjct 15798 CTTATTGACACGTACATCAAGGACATTGTCGAGAAAACCCACCTGCTGCGTGCCATTGAG 15739 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || | || ||| | || |||||||| | ||||| | ||||||| || | || Sbjct 15738 ACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCCG----CG 15683 Query 102168 CGT----TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| |||| | || || || | || ||||| || ||||||||||||||||| Sbjct 15682 CGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCTTCTC 15623 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || ||||||||| | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 15622 GGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTT 15563 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 15562 CTCGAACGAGCTCATCAGCCGTGACGAGGG 15533 >seq96 Length=43778 Score = 114 bits (126), Expect = 2e-20 Identities = 280/417 (67%), Gaps = 7/417 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| ||||| || ||||| || || |||| || | ||||| ||||| |||| || Sbjct 38835 GATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTT 38894 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTA-TCAAAACCATCCATCTCTGTCAAAA 15996 ||| | || | || || | ||| | | | | | |||||||||||||| || || Sbjct 38895 CGTACCAGCAAGCACCACCACACCC-TCACTTGAGTTGAAACCATCCATCTCGACCAGAA 38953 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--T 16053 ||||||||| || | ||| || || || || || | | | | || || || | | Sbjct 38954 GCTGGTTAAGTGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGT 39012 Query 16054 GCTT-TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 || | |||| ||||| || ||||||||||| || ||||| || || | ||||| Sbjct 39013 GCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAGCC 39072 Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 | | ||||||||| || ||||| | ||||||||||| |||||||| | |||| Sbjct 39073 TCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGTCC 39132 Query 16173 GCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | ||| || ||| || || ||| ||||| || |||| ||| || || Sbjct 39133 GAACCAGAAATGCTGAAGAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAGCAGC 39192 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 |||||||| ||||| || || |||| || ||||| || |||||||| ||| Sbjct 39193 GTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACCA 39249 >seq116 Length=38388 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 176912 TTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACC 176971 || |||||||||||||| || ||||| ||||| || ||||| |||| ||||| || || Sbjct 14417 TTACCACGAAGAGGGAAAACGCCGTACTGATCACGTCCAACAACAGCAAGACCAGCCACT 14476 Query 176972 GCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGA 177024 || || | ||| || |||||||| || |||| || |||| ||||| ||||| Sbjct 14477 GCCAGTGCTTTGGCTGAATCACCTTCCGTCAAAATAAGTGAACACTCACCAGA 14529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713682904720