Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq663 174 2e-38 seq96 170 2e-37 seq116 86.0 7e-12 >seq663 Length=23881 Score = 174 bits (192), Expect = 2e-38 Identities = 1043/1657 (63%), Gaps = 34/1657 (2%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| || | ||| ||| Sbjct 21285 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTG 21344 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | ||| Sbjct 21345 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGCCA 21404 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || |||| || ||| | | |||| || | || ||||| || ||||||||| Sbjct 21405 CGGTCGGCCGACAGGTCCAGCACTGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 21464 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||||| | || || ||| || | || || | || ||||| | |||| || Sbjct 21465 TCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAACCACCGTCGTTCAGAATC 21524 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 ||| | || || ||||| || | || | || || | | || | |||| Sbjct 21525 TGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATCAGCTCCTTCATCAGGTACTTG 21584 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | || || |||||||| || ||| ||| ||||| | ||||||||| Sbjct 21585 TTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTACATGTTGGACGTGTAGGGC 21644 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| | |||| |||||||| | ||| || ||||| ||||| || |||||||| |||| Sbjct 21645 TCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATGGGGGCCACC 21704 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || || ||| || ||||| | | | | || ||| || || ||||||| || Sbjct 21705 AGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTCTCCTTCAGCGCAGCCCAATCCCAA 21764 Query 109894 CGACC--ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAG 109951 | || || || ||| |||| |||||| || || | ||||||| | Sbjct 21765 AGTCCGGACGAAGG--AGTGACACC---CCACATGTCGAACTGGAAAACACCCTTGCTGG 21819 Query 109952 CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCT 110011 | || || |||| |||| ||||||| | ||| ||| ||| | ||| || | || Sbjct 21820 CCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCAACTCCTTGGCAATCTCCATCGACGTCT 21879 Query 110012 CTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCAC 110071 | | | || | || || ||||| || || | |||| || | || || | Sbjct 21880 CCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTCAACTCACGTGCCTGCTCGC 21939 Query 110072 AGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCA 110130 || || | | || || || || | ||| |||| || ||||| |||||||| | ||| Sbjct 21940 TCTCAAACGCGTAGTTCATAAGGA-TGAACGCATCAGCCAGACCTTGAACACCAATACCC 21998 Query 110131 ATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCG 110190 | ||| || || |||||| || || || | | || ||||| ||||| |||| Sbjct 21999 ACGGGACGGTGGCGCATGTTCGACTTGCGCGCCTCTACGACCGGGTAGTAGTTGACGTCG 22058 Query 110191 ATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCG 110250 || ||| || || || |||||| ||| || | ||||| | | | ||| | | Sbjct 22059 ATCACCTTGTTCAGGTTGCGCGTCACCACCTTGGTTACTTCATACAACCTTTTGTAGTTG 22118 Query 110251 AACGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACAC 110309 ||| |||| ||| ||| | | || || || | ||||| | ||||||||| Sbjct 22119 AACACAC-CGTCCTCC------ACAAACATCGGCAGTGCCACCGACGCCAAATTGCACAC 22171 Query 110310 AGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTT 110366 || ||| || ||||| |||| | ||| ||||||||| || | | Sbjct 22172 AGCCACCTCATCAGGAGAAGTGTACTCCATCACTTCACAGCACAAGTTGCTGGAGCGGAT 22231 Query 110367 AATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTA 110426 || |||||||| | ||| ||||| ||| ||| ||| ||||| || |||||| | Sbjct 22232 CGTG---CCCAAGTTTTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTACAGCATGAA 22288 Query 110427 TGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGAC 110486 ||| ||| || || |||| | | || ||||| ||| | | || || Sbjct 22289 TGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAACCACAGTTGCTGTGCATTGAT 22348 Query 110487 AGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGT 110544 || |||| ||| | || |||| ||||||||| ||| | |||||| || | Sbjct 22349 CGTCTTGCG--AGCACGTCCCTCCTTCTCGTACTTCTCGTAGAGCGTCTCAAACTCGTCA 22406 Query 110545 CCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACC 110603 || | ||| || | || || || | | ||| ||||| | ||| || ||| Sbjct 22407 CCCCAGCAC-TCGTAGAGTCCAGGAGCTTCATTGGGGCAGAACAAACTCCACTTGCCATT 22465 Query 110604 CTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCA 110663 | || || | |||||||||||| || || | ||| | || |||| | ||| || Sbjct 22466 GGCTTCCACACGCTTCATGAACAGATCGGGGACCCAAAGGGCGTAGAACAAGTCGCGCGC 22525 Query 110664 ACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTG 110723 ||| | || | ||| ||||| ||| | ||||| || || | | ||| | ||| Sbjct 22526 CCGATGCAACTCGTTACCGTGGTTCTTGCGCAAGTCCAAGAACTCAAACACATCTGCGTG 22585 Query 110724 CCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATA 110780 ||| || || || || | ||||| || ||||| || || || |||||| || || Sbjct 22586 CCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCGTTTACCTCCGCCCTGGTCCACGTA 22645 Query 110781 GCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGT 110840 ||| || || | || || |||| | ||| || || || |||| ||| || || || Sbjct 22646 GCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGATGCCATTGGACGAGCCGTTGGT 22705 Query 110841 ACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGC 110900 || | || | || ||||||| |||| ||| ||| || ||||| || || || Sbjct 22706 GCCTCGGATGTAGCTGTTGGTGGCACGGATGTTGTGCATACTAATGCCAATTCCTCCAGC 22765 Query 110901 CCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGC 110960 |||||| || ||||||| | ||||| | ||||| || |||||||| || | Sbjct 22766 CCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTC 22825 Query 110961 CTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 || | || | | ||||| || |||| || ||||| ||||| || || |||||||| Sbjct 22826 CTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGACGTGGCGTGCCAGCGTTGAAGAG 22885 Query 111021 TGTAGGTGTCGCATGAATGAACAGACCT-TGGGACAT 111056 || || || || || |||| | || | |||||||| Sbjct 22886 CGTGGGCGTGGCGTGCGTGAAGA-ACTTCTGGGACAT 22921 >seq96 Length=43778 Score = 170 bits (188), Expect = 2e-37 Identities = 351/514 (68%), Gaps = 16/514 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || || | ||| | ||||||||||| | ||||| Sbjct 38836 ATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTTC 38895 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || ||| Sbjct 38896 GTACCAGCAAGCACCACCACACC---CTCACTTGAGTTGAAACCATCCATCTCGACCAGA 38952 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||| | || | ||||||||| |||||| | | | | |||| ||||| Sbjct 38953 AGCTGGTTAAGTGTGTTTTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTTC 39010 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| || || ||||| ||||| || || ||||| ||| ||||| | Sbjct 39011 GTGCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAG 39070 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | || || ||||| ||||| || || ||||| ||||||||||| | ||||| Sbjct 39071 CCTCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGT 39130 Query 11789 TTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | ||| || ||||| ||| ||||| ||| ||||||||| |||| || || Sbjct 39131 CCGAACCAGAAATGCTGAA-GAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAGC 39189 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||| ||||| || | ||| |||| || || || |||||||||||||||| Sbjct 39190 AGCGTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACCA 39249 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || |||||||| || | |||| | |||| |||| Sbjct 39250 AGCTCCGTGAAGCGCTTCTGGTTGCGCAGGAAGTCAACGAACTCCATGATCTCCTTCTTG 39309 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAACGAG 12001 || ||| | ||| | ||||| || |||||| Sbjct 39310 GCCTCGTCCACACCGGCCACATCCTTG-AACGAG 39342 >seq116 Length=38388 Score = 86.0 bits (94), Expect = 7e-12 Identities = 287/437 (66%), Gaps = 20/437 (5%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| ||||||||||| || | ||| || || | | ||| || | | |||| ||| Sbjct 13302 AACCTGTACCAATACCCTCTGCACCATTGACAAGCAGCATTGGAATGATAGGCACGTAGT 13361 Query 167417 AGTCGGGTTCAAT--GGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTT- 167473 | ||||||||| |||| ||||||||| || |||| | | |||||| |||| Sbjct 13362 ATACGGGTTCAACCGGGAA--ACCATCATCGTCGGCGTAGGCCAACAGGGCATCGTCTTC 13419 Query 167474 -TGGGATCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGA 167532 | || ||| | | |||| | ||| |||| ||| || || || | | | Sbjct 13420 TTCGGG--GAATACCAGGCGAGTGTGCTTTTGAAGCAACGTGAAAATATAACGAGGACTA 13477 Query 167533 GACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTG 167592 | |||||||| ||||| || ||||||||||| ||||| |||| | || || | Sbjct 13478 GCGGCATCCTTACCACCTTGCAGCCGTGTACCAAACTGACCGGATGGATACAGCAGTGGG 13537 Query 167593 ATGTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT----TTCAGCGAGGGA 167648 | || || || ||| | | || | ||||| || || ||||| | |||||| | Sbjct 13538 AGATTGTTGGAGCCCACAAAGTCCTGGGCCATATTAACAATCGTCGAGTGCAGCGATG-- 13595 Query 167649 AACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACA-TATGCTGCCAACTGTGCAACCT 167707 |||| |||||||||||||| | | ||| || ||| || | |||| ||||| |||| Sbjct 13596 --CTTCACCGTGGTGGTAAGCTGTGTGTTC-GCTACAGTAACCAGCCAGTTGTGCCACCT 13652 Query 167708 TCATCTC-ATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGT 167766 ||| ||| || || || || | || || | | | | |||||| || || ||| | Sbjct 13653 TCACCTCGCTCGTT-AGTTTGCGCTTCAAGCAAGCAAAAAGAACCTTACGCTGGGAAATT 13711 Query 167767 TTGAGACCATCTGCCAC 167783 || ||||| || |||| Sbjct 13712 TTCAGACCGTCAACCAC 13728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588948752497800