Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq450 197 1e-45 seq13 87.8 1e-12 >seq450 Length=22763 Score = 197 bits (218), Expect = 1e-45 Identities = 405/597 (68%), Gaps = 14/597 (2%) Strand=Plus/Minus Query 29798 TCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACT 29857 ||| ||||||||||||||| | ||| || || || ||||| || | || | |||| Sbjct 20124 TCTGCAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACT 20065 Query 29858 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29917 | || |||| || || | || || |||| || |||||| || | ||||||||| | Sbjct 20064 CGCCAGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAA 20005 Query 29918 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 29977 |||| || || || || || |||||||| | || | |||||| | ||||||||| |||| Sbjct 20004 TGTTGAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCT 19945 Query 29978 CTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCA 30037 |||| || |||||||||||||| | ||||||| || || || ||||| | | Sbjct 19944 CTCCATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTGA 19885 Query 30038 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CT 30092 || ||||||||||| | | | ||| || | ||| |||||| |||| || Sbjct 19884 GATCAGCAGGGTTCCAGGCCGAAAGTACGATCCGGCGGTCGGTTGGGTTCGTTCGCAGCT 19825 Query 30093 GATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCA 30151 || | || | || ||| ||||| || || | | ||| || || || Sbjct 19824 TGTGAATCACCTCAGC------CAGTTGATCTACACCTTGATCAGTGTAATCCGCATGCA 19771 Query 30152 TGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30211 |||||||||| | || || ||||| | |||||||||||| |||||||| || ||||| | Sbjct 19770 TGTCCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCAC 19711 Query 30212 CCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 30270 | |||| | |||| | ||||| | | |||||| | || | || || ||| ||||| Sbjct 19710 CAACTTCTC-GTGCCTGCAGCCCTCGACTATCCAAATACTCACGCGATCCATTGCCGTCC 19652 Query 30271 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 30330 ||||| | | |||||| ||| | | | ||| || |||| ||||||| Sbjct 19651 CAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACTGGTGTCGCCACTGATGAACCAC 19592 Query 30331 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30387 || ||||||||| | || | ||| || || ||||||||||| || || || ||| Sbjct 19591 AGAAGCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAAC 19535 >seq13 Length=65522 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 48422 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 48481 ||| ||||| || ||||| | |||||| | |||||||| ||| | || ||||| || Sbjct 47101 GTTGAACAGAATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATGACTCCGGCGCCAGT 47160 Query 48482 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 48541 ||| || || || || || || ||||| || | || ||||||| | ||||| ||| Sbjct 47161 GTCGATGAACTTCTTAAGCGCAAGGCCAGAGCGAGGCGCCACCCGGGCGTAGCAGCCGTC 47220 Query 48542 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGAC 48601 ||||| | | ||||||||||||| || ||| || ||||| | |||| ||| | Sbjct 47221 GGGCACAGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCAGGGATGACGGC 47280 Query 48602 CGGGTGAGCGGCCGCCAGGTC 48622 || ||||||| ||||| Sbjct 47281 GTCGTAGGCGGCCGAGAGGTC 47301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408599168920073