Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq926 105 5e-18 seq1018 98.7 8e-16 seq427 96.9 3e-15 >seq926 Length=12678 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||| || || || || ||||| ||| | || | | | || |||| ||||| || Sbjct 12067 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 12008 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || |||| ||||| || || || ||||||||||| || || |||||||| || || Sbjct 12007 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTG 11948 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| |||| ||||| || || |||| ||| |||||||| | || Sbjct 11947 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 11888 Query 101453 TTTACAAATATCTGCATG 101470 || || || ||||||||| Sbjct 11887 TTGACGAAGATCTGCATG 11870 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||| || || || || ||||| ||| | || | | | || |||| ||||| || Sbjct 12295 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 12236 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || |||| ||||| || || || ||||||||||| || || |||||||| || || Sbjct 12235 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTG 12176 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| |||| ||||| || || |||| ||| |||||||| | || Sbjct 12175 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 12116 Query 101453 TTTACAAATATCTGCATG 101470 || || || ||||||||| Sbjct 12115 TTGACGAAGATCTGCATG 12098 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| ||| | || | | | || |||| ||| Sbjct 11845 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 11786 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| ||||| || || || ||||||||||| || || |||||||| Sbjct 11785 TTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTC 11726 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| |||| ||||| || || |||| ||| |||||||| Sbjct 11725 TGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 11666 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 11665 AGCGTCTTGACGAAAATCTGCAT 11643 >seq1018 Length=11520 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| ||| | || | | | || |||| ||| Sbjct 259 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 200 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| ||||| || || || ||||||||||| || || ||||| || Sbjct 199 TTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTC 140 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| |||| ||||| || || |||| ||| |||||||| Sbjct 139 TGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 80 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 79 AGCGTCTTCACGAAGATCTGCATG 56 >seq427 Length=22329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| ||| | || | | | || |||| ||| Sbjct 25 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 84 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| ||||| || || || ||||||||||| || || ||||| || Sbjct 85 TTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTC 144 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| |||| ||||| || || |||| ||| |||||||| Sbjct 145 TGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 204 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 205 AGCGTCTTCACGAAGATCTGCAT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396260525491257