Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq130 264 2e-65 seq663 246 6e-60 >seq130 Length=37012 Score = 264 bits (292), Expect = 2e-65 Identities = 568/843 (67%), Gaps = 21/843 (2%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 15226 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 15285 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | || |||| | | ||||| | Sbjct 15286 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAGTAGAGCAGACG 15345 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--GAC 48019 || || ||| |||| ||||| | ||||||| ||||||||| ||||| ||| Sbjct 15346 GTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGAC 15405 Query 48020 ACGGGCAAAGCCTTTGTG-AGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 | || || | | | | ||||| | ||| ||| ||| || || | ||| |||| Sbjct 15406 AGGGAGCGAGTC---GCGCACGAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTC 15462 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | |||||| ||| | | |||||| ||| ||||| || | | |||||| || Sbjct 15463 GTGCACGCGGCTCTCCGGCAGCTTGTTGACCAG---CTTGGAGTACATGAGGCAGGCGAA 15519 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 |||| |||||| ||| ||||| |||||||||||| |||| ||||||| ||||||||||| Sbjct 15520 GTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCAT 15579 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || ||||||||||| || | ||| ||||| ||||||||||| ||||| Sbjct 15580 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCTC 15639 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCA 48315 |||||| || || || |||| || | | || | || | ||| | ||| Sbjct 15640 CACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACGCGCGGGTC---GCACCA 15696 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 |||||||||| || ||||||| || || || || ||||| ||||| || | || Sbjct 15697 CTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCTCAATGGCACGCAGCAG 15756 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTC 48432 | | ||| | |||| | || || | | |||||| | ||||| ||| Sbjct 15757 GTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGCAGC---GAGTACACCTC 15813 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| ||||||||| | |||||| ||| || Sbjct 15814 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGCACTTG 15873 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || || ||| || || ||||| |||||||| ||||| |||||||| Sbjct 15874 CACCTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTGACTATACCATCACTGGCAGCAAA 15933 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| || || || || | ||| ||||||||||||| ||||| |||| ||| Sbjct 15934 GAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGGTTCACCCAGTCCTT 15993 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | ||| | | || |||| || || | ||||||||||| || || || ||||| Sbjct 15994 GAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTA 16053 Query 48673 CAT 48675 ||| Sbjct 16054 CAT 16056 >seq663 Length=23881 Score = 246 bits (272), Expect = 6e-60 Identities = 1137/1773 (64%), Gaps = 77/1773 (4%) Strand=Plus/Plus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||| ||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 21285 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTT- 21343 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || |||||||||| Sbjct 21344 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 21387 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGA-TATCTCTCTGGGAGAGCTCC 212771 || ||| | | | | | ||| || | || ||| | | | || |||| || |||| Sbjct 21388 GGCAAATGTAGGCGCCACGGTCGGCCGACAGGTCCAGCACTGACT-TCTGCTTGATCTCC 21446 Query 212772 CACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGAC 212831 ||||| |||||| | | || |||| || || |||| | | | |||||||| || Sbjct 21447 CACACCGTCTTGTACTTCTCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAA 21506 Query 212832 CCCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCC--CTGGTCT 212886 || | || | |||| ||| ||| | || |||||| |||| || | Sbjct 21507 CCACCGTC---GTTCAGAATCTGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGAT- 21562 Query 212887 CCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCT 212946 ||| ||| | ||||| ||| || ||| ||| || || | ||||| | | | Sbjct 21563 -CAGCTCCTTCATCAGGTACTTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGT 21621 Query 212947 GGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGC 213006 ||| | ||| || |||||||||||||| ||||||||| |||| ||||| ||||| Sbjct 21622 TGTACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAG 21681 Query 213007 TGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGC 213066 || || |||||||| |||||||| || ||| | | ||||||| | | | | Sbjct 21682 AAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCAC-ATTC 21740 Query 213067 GCCGA-AGCTCTGCCCAGTCCCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACA 213123 || ||| | ||||| ||||| || ||| ||| | || ||||| Sbjct 21741 TCCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAGGAG--------TGACACCCCACA 21792 Query 213124 TGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCAT 213183 |||| ||||| || | || ||||| | || ||||||| ||| ||||||||| Sbjct 21793 TGTCGAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCA 21852 Query 213184 GCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCT 213243 ||||||||| | ||| |||| || || | |||||||||||| || || || || | Sbjct 21853 ACTCCTTGGCAATCTCCATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGT 21912 Query 213244 CCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCAT-CATGCGTTGGAACACA 213302 | |||| | || |||| | | | || || | | ||| | |||| || Sbjct 21913 TCTTGTTCAACTCACGTGCCTGCTCGCTC-TCAAACGCGTAGTTCATAAGGATGAACGCA 21971 Query 213303 TCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCA 213361 |||||||| || || || || || || | ||| | ||| | || ||| |||||| | || Sbjct 21972 TCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGC- 22030 Query 213362 CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTT 213421 ||| | | ||||| ||||| |||||| | |||||| |||||||| || |||| || Sbjct 22031 CTCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTT 22090 Query 213422 GGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGG 213481 ||| || | || | || |||||||| ||||||| ||||||| || Sbjct 22091 GGTTACTTCATACAACCTTTTGTAGTTGAACACA------CCGTCCTCCACAAACATCGG 22144 Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGAT 213541 ||| || | |||| ||||| || |||||||| | || ||||||||||| | Sbjct 22145 CAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCAC 22204 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTT 213601 || ||||| ||||||| | ||||| ||||||| ||| || ||||| ||||| ||| Sbjct 22205 TTCACAGCACAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTT 22264 Query 213602 GGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTG 213661 || | |||||||| |||||| | || || ||||| | ||| | | || | || Sbjct 22265 AGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGA--TG 22322 Query 213662 GC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTAC 213719 || ||| || | | || |||| | | | || ||| | | ||||||| Sbjct 22323 GCAAACCACAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTT---CTCGTAC 22379 Query 213720 TGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA-CAGGATGC 213778 | ||||||||| | || |||| |||||| | || ||||| ||| | || Sbjct 22380 TTCTCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCAT-T 22438 Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 ||| || | | ||||| | || | || || | || ||||||||| || ||||| Sbjct 22439 GGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGAC 22498 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCG 213895 ||| || ||| ||||| ||| | | || | ||||| || ||| ||||| Sbjct 22499 CCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGT---TACCGTGGTTCTTGCG 22555 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC-AAAGGCGC 213954 || || | || ||||| | || |||||||| ||||||| ||| || || |||| | | Sbjct 22556 CAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCC 22615 Query 213955 CCGGCCTCT--TGCCGCCCTGGTCCAC-CAGCCTGGCCACCAT-GTTGAAGATGCGCAGG 214010 | || | | |||||||||||||| ||| | || || ||| || | |||| Sbjct 22616 CTTGCGTTTACCTCCGCCCTGGTCCACGTAGC--GAGCAGTATCGTTAAACACCCGCAAC 22673 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | ||| | | || |||||| |||||||| || || || | || ||| | Sbjct 22674 ATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGG 22733 Query 214071 AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC 214130 | |||| ||| | || || || || || |||||||||| ||| || || || Sbjct 22734 ATGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTC 22793 Query 214131 ACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAG 214190 | || || ||||| | || ||| || | |||||||||||| || Sbjct 22794 AGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGAC 22853 Query 214191 AGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG 214250 | ||||| | | || ||||| |||||| |||||||| |||| || | | ||||| Sbjct 22854 AATTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTC 22913 Query 214251 TTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGA 214310 | || | |||| ||| ||||||| | | | ||||||| ||||||||| ||| Sbjct 22914 TGGGACATGAGCTCGTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCTAGC 22973 Query 214311 GCGCAC-CTCATCAGCATGTGCTGGGGCCTCTC 214342 || ||| | ||| | ||| ||||| |||| ||| Sbjct 22974 GC-CACGCGCATGATCATCTGCTGCGGCCGCTC 23005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931489704963840