Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq130 248 2e-60 seq663 93.3 8e-14 >seq130 Length=37012 Score = 248 bits (274), Expect = 2e-60 Identities = 565/847 (67%), Gaps = 19/847 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || |||||| ||||| ||| | ||||| | Sbjct 16062 TGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTGGATCTCGTG 16003 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| || || ||||| ||||| Sbjct 16002 CACGACCTCAAGGACTGGGTGAACCTCACGGACAACGAGCGCCACTTCATCAAGCACGTG 15943 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| |||||||| ||| |||||||||||| |||||||| || | || |||| | Sbjct 15942 CTGGCCTTCTTTGCTGCCAGTGATGGTATAGTCAACGAGAACTTGGCCATGAACTTCAGC 15883 Query 25660 AGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 | || |||| ||| | | ||||| || |||||||| |||||||| |||||||| || Sbjct 15882 AACGAGGTGCAAGTGCCT-GAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAA 15824 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAG 25778 | ||||| |||||||| | |||| | |||||||| | ||| | | ||||| Sbjct 15823 CATCCACTCGGAGGTGTACTCGCTGCTTATTGACACGTACATCAAGGACATTGTCGAGAA 15764 Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838 | | ||| | ||||||| ||| || || | || ||| ||| || ||||| Sbjct 15763 AACCCACCTGCTGCGTGCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGC 15704 Query 25839 CATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC---GAGCGGCTGGTAGCCTTTGC 25895 | |||||| | | || | ||| ||| | || |||||| | |||||||| Sbjct 15703 GCTCAAGTGGTGCGA---CCCGCGCGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGC 15647 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 ||| |||||||| ||||| ||| || || || ||| ||||||||||||||||| || Sbjct 15646 TGCAGTGGAGGGTATCTTCTTCTCGGGCTCCTTCTGC-TCCATCTTCTGGCTCAAGAAGC 15588 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || |||||| || || ||| || ||||||||||||||| | |||||||| | | Sbjct 15587 GTGGTCTCATGCCTGGTCTAAGCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGC 15528 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 ||| || || |||||||| | ||| | | | || || || || || | |||| Sbjct 15527 ACACGGACTTCGCCTGCCTCATGTACTC---CAAGCTGGTCAAC-AAGCTGCCGGAGAGC 15472 Query 26075 C-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | ||| || ||| | || ||||||| ||||||| | ||||| Sbjct 15471 CGCGTGCACGAGATCGTGCGTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTCG 15412 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | ||||||||| | |||||| |||| |||||||||| ||| Sbjct 15411 CTCCCTGTCGAGCTCATCGGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTG 15352 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAACCCGT 26251 || |||| |||||| | | ||||||| | ||| |||||| ||| | ||||||| Sbjct 15351 GCTGACCGTCTGCTCTACTCGCTGGGAGTGTCCAAGATCTACA--ACGTCAAGAACCCGT 15294 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| | || ||| || | || |||||||||||||| || ||| | || | Sbjct 15293 TCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGG 15234 Query 26312 GCGACTA 26318 |||| || Sbjct 15233 GCGAGTA 15227 >seq663 Length=23881 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 221074 CGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATC 221133 |||||| | ||| ||| |||| |||| | || || |||||| || | ||| || Sbjct 21542 CGTCCAGATGCCCAACTCGATCAGCTCCTTCATCAGGTACTTGTTAACGATCGTGAACTC 21601 Query 221134 TCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTT 221193 || | ||||| | | | ||||| ||| || ||| | || ||||| ||||||||| Sbjct 21602 GCCAGCAAGCACACGACGGTTGTACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTT 21661 Query 221194 GCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAG 221253 ||||| ||||||||| || || || |||||||| ||||||||||| |||||| || Sbjct 21662 GCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAG 21721 Query 221254 TCCG 221257 ||| Sbjct 21722 ACCG 21725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928801829317440