Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq663 172 7e-38 seq130 136 5e-27 seq96 118 1e-21 >seq663 Length=23881 Score = 172 bits (190), Expect = 7e-38 Identities = 719/1114 (65%), Gaps = 33/1114 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 ||||| || ||||||| | |||| | |||| ||| || | | |||| | || Sbjct 23065 TACTTCGGCTTCAAAACATTAGAGAGGGGCTACCTTTTCCGCGTGAACGGCAAAGTGGTG 23006 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || || ||| | ||| ||||||| || || | ||||||||| | ||||| | Sbjct 23005 GAGCGGCCGCAGCAGATGATCATGCGCGTGGCGCTAGGCATCCACAAGAGCGACATCAAG 22946 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 75324 | | ||||||||| ||||| |||||||| | || | |||| ||||| || || || Sbjct 22945 GCGGCCTTGGAGACGTACGAGCTCATGTCCCAGAAGT-TCTTCACGCACGCCACGCCCAC 22887 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 |||||||| ||||| || ||| | || || ||||| |||||| | | || | | Sbjct 22886 GCTCTTCAACGCTGGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTGCTGGCTATGCA 22827 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 ||| ||||| || | || || || | || || | | ||||||| ||||| ||||| Sbjct 22826 GGACGACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCCTGCATCTCCAAGTG 22767 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGG 75503 |||||| || ||||| || || || | | | |||| || | || || || | Sbjct 22766 GGCTGGAGGAATTGGCATTAGTATGCACAACATCCGTGCCACCAACAGCT-ACATCCGAG 22708 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || |||| || || || ||| | || || ||||||| || || | Sbjct 22707 GCACCAACGGCTCGTCCAATGGCATCATCCCCATGTTGCGGGTGTTTAACGATACTGCTC 22648 Query 75564 GCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || | || || ||||||||||| |||| | ||| |||| || | Sbjct 22647 GCTACGTGGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTCGCTATTTACCTGGAGCCTT 22588 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| || ||| | | |||||| | || || || ||||| ||| |||| | || Sbjct 22587 GGCACGCAGATGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGGTAACGAGTTGCATC 22528 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 || | || | || | |||| ||| | || || || ||||||||||| || || | Sbjct 22527 GGGCGCGCGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAG 22468 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTG 75799 ||| | ||| | | ||||| || | | || || || |||| ||| || | | Sbjct 22467 CCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTG-G 22409 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 ||||| |||||||| | |||||| ||||| || ||||||| | || ||| || Sbjct 22408 GGTGACGAGTTTGAGACGCTCTACGAGAAGTACGAGAAGGAGGGACGTGCTCGCAAGACG 22349 Query 75857 A-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 | | | | |||| | | |||| || || || | | |||| ||||| || Sbjct 22348 ATCAATGCACAGCAACTGTGGTTT-----GCCATCCTTGACGCGCAGATTGAGACGGGTG 22294 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 |||| ||||| |||||||| || |||| ||| ||||| | || ||||| | Sbjct 22293 TTCCATTCATGCTGTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAAAACTTGGGCA 22234 Query 75975 CAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 | ||| |||| | | ||| ||| ||| | | |||||||| | |||||| Sbjct 22233 CGATC---CGCTCCAGCAACTTGTGCTGTGAAGTGATGGAGTACACTTCTCCTGATGAGG 22177 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCA 76091 |||||| ||||||||||| || | || || || | || || || || ||| | Sbjct 22176 TGGCTGTGTGCAATTTGGCGTCGGTGGCACTGCCGATGTTTG----TGGAG-GAC-GGTG 22123 Query 76092 CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAG 76151 || | || ||| | ||||| | || ||| | || || || || ||| | Sbjct 22122 TGTTCAACTACAAAAGGTTGTATGAAGTAACCAAGGTGGTGACGCGCAACCTGAACAAGG 22063 Query 76152 TCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 | || ||| || | || || || | ||| ||||| ||||| || ||||| ||| | Sbjct 22062 TGATCGACGTCAACTACTACCCGGTCGTAGA-GGCGCGCAAGTCGAACATGCGCCACCGT 22004 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 || | ||| | |||||||||||||| || |||| Sbjct 22003 CCCGTGGGTATTGGTGTTCAAGGTCTGGCTGATG 21970 >seq130 Length=37012 Score = 136 bits (150), Expect = 5e-27 Identities = 354/528 (67%), Gaps = 14/528 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 ||||| | ||| | || ||| | ||||||| || || ||||| | || |||| ||| Sbjct 15747 GCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGAC 15688 Query 65056 ACAAA-GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | || || || | || ||||| |||||||||||||| Sbjct 15687 CCGCGCGTGTCG-TCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTT 15629 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| ||||||||||| || || Sbjct 15628 CTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCT 15569 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 | ||||||| || || || || ||| || ||||| | ||| ||| || ||| || Sbjct 15568 AAGCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCC-TG-- 15512 Query 65235 GCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGA 65290 ||| | | | || | | || || ||| | | |||| |||||| Sbjct 15511 CCTCATGTACTCCAAGC-TGGTCAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGC 15453 Query 65291 AAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATC 65349 || || || | ||| ||| | | |||| | ||| | ||||| ||| | |||||| Sbjct 15452 GTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCC-TGTCGAGCTCATC 15394 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||| | | |||| | |||||||||||| ||| | || ||||| ||| | Sbjct 15393 GGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTC-TA 15335 Query 65410 CAAGTTGGG-GTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACAT 65468 | | |||| ||| | || | |||| ||||| || || |||| ||||| | || Sbjct 15334 CTCGCTGGGAGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGAT 15275 Query 65469 TAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || | || |||||||||||||| |||||||| || || || || Sbjct 15274 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 15227 >seq96 Length=43778 Score = 118 bits (130), Expect = 1e-21 Identities = 284/422 (67%), Gaps = 17/422 (4%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||||||||||||| || || || |||| || || ||||| || ||||| || Sbjct 39249 TGGTGCCAAGATCCCCAAGGGTGCGCTACTCGTTGGCCCCCCCGGTACAGGTAAGACGCT 39190 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCA 175392 || ||| |||| || ||||| | | || |||||| || || | |||| | Sbjct 39189 GCTGGCCAAGGCCACGGCTGGTGAGGCTAGCGTTCCATTCTTCAGCATT--TCTGGTTCG 39132 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 |||| | |||||||| |||||||||||| | | || || ||||||||| | Sbjct 39131 GACTTCATCGAGATGTTCGTTGGTGTGGGTCCGTCCCGTGTGCGTGATCTCTTTAAGGAG 39072 Query 175453 GCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGC-A 175511 || || | || || || ||||| ||||||||||| || ||||| || |||| || Sbjct 39071 GCTCGTGCGAACGCTCCGTGCATTGTGTTCATTGATGAAATCGATGCTGT-GGCACGCGC 39013 Query 175512 ACGCAGC----GCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAAC 175567 ||| ||| || | | | | || || |||||| | ||| | ||| |||| || | Sbjct 39012 ACGAAGCAAGGGCAACTTCTCGGGCGGC-AACGACGAGCGTGAAAACACACTTAACCAGC 38954 Query 175568 TACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTGGTTATTGCGGCCA 175624 | || |||||||||||| || || | |||| || | ||||| |||| | | Sbjct 38953 TTCTGGTCGAGATGGATGGTTTCAACTCAAGTGAG---GGTGTGGTGGTGCTTGCTGGTA 38897 Query 175625 CTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGA 175684 | || |||| |||||| ||||| | || |||| || || ||||| || ||||| ||| Sbjct 38896 CGAACCGCGCGGATATTCTTGACAAGGCTATCCTGCGTCCCGGTCGATTCGATCGGCAGA 38837 Query 175685 TC 175686 || Sbjct 38836 TC 38835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542001198880