Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq389 125 2e-23 seq1191 104 7e-17 >seq389 Length=23210 Score = 125 bits (138), Expect = 2e-23 Identities = 181/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 |||||||| || ||||| || | || || || ||||||||||| ||||| ||||| Sbjct 3341 CGACGCTGGATGTAACCCGTCTCGGCCGTCTTCACGGCTGTATCAATCAGACCTTCACGA 3282 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||||||||||| ||||| || | ||| | |||| | ||| | | ||| | || Sbjct 3281 CCACCCATAGCGTGGAAAAAGAACTCCTGCGGTGTCAAACCCTTCAGGTACGAGTTTTCC 3222 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 || |||||||| |||||| | ||| || |||| |||| ||||| || | | Sbjct 3221 ACAAAACCACGACTCTCGGGGCCCAGATCATC---CTTGCCGTAGTGCGGCAGTGTACGG 3165 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | ||||| |||||||||||||| ||||| |||||||| |||| || | ||| Sbjct 3164 TGATTGAAACCGTACGGGATACGCTTTCCTTCAACATTCTGCTGACCCACACAAGCAATA 3105 Query 302830 ATCTGCGAAATATT 302843 ||||||||||| || Sbjct 3104 ATCTGCGAAATGTT 3091 >seq1191 Length=9494 Score = 104 bits (114), Expect = 7e-17 Identities = 369/566 (65%), Gaps = 18/566 (3%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| |||||||| || || | ||| | |||||| |||||||| Sbjct 5966 CCGTGAGAGATCAGACAATCGCGCTCCATCTCTCCCATACGCAAACCACCCTCGCGAGCA 5907 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| || || || | Sbjct 5906 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACGGGACCACGCGAACGCGAGTGGATC 5847 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAA 251667 || || | ||||||||||| |||||||||||||| | ||| ||||||||||| || Sbjct 5846 TTGTCGTCGACCATATGCTTCAGACGCTGGTAGAACGTGGGTCCGATGAAGATCTGCGCT 5787 Query 251668 GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC--ATAAC 251725 | || | || || | || | ||||| || ||||| || | | ||| || | Sbjct 5786 GTCAGGCGACGGCCCGTGTGGCCGCTGTACATGACCTCGTTGCCGT--GCTTCTGGTAGC 5729 Query 251726 CAAGTTTCTGTAGCTCTG-AAGCAATA---TCACCAATCTTGAATTTGCTAAAACTG-GT 251780 | || || || || | || |||||| | || || | | | ||| | || Sbjct 5728 CTAGGTTGTGCAG-TGTGTCGGCAATAGCTTGGACAGTC----ACATCCGTGAACGGAGT 5674 Query 251781 GCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTG 251840 |||| || | | |||| | || | |||||||||| | || ||| || || Sbjct 5673 AGCGTCACCTTCATCACCCGTCTGCGACGACACTTTGCCCAGCAGACACTCGACAAGATG 5614 Query 251841 GGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCC 251900 | | |||||||| |||||||| || || || | | ||| || || | | || Sbjct 5613 CCCCACCGTCATACGTGACGGAATAGCGTGAGGGTTCACAACGATATCCGGCGTGATACC 5554 Query 251901 ATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT--TTCCAATAGTTCCCTTTTGT 251958 || | ||||| ||||| |||| || | | |||| | ||||| || ||||| ||| Sbjct 5553 TTCCACCGTGAACGGCATGTCCTCTT-GGCGGT-ATGTCATACCAATCGTACCCTTCTGT 5496 Query 251959 CCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACC 252018 |||||||| || ||||| |||||||| |||| |||| | |||| | ||| ||| Sbjct 5495 CCGTGACGCGATGCAAACTTGTCACCAATCTGAGGAATACGAATATTACGGAAGCGCACC 5436 Query 252019 TTACAGAAGTTGTAACCATCACCGTT 252044 || ||| ||| | || ||| |||| Sbjct 5435 TTCGTGAACTTGAAGCCGTCAGCGTT 5410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471747807789237