Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1097 201 2e-45 seq130 188 1e-41 seq117 188 1e-41 seq53 188 1e-41 seq663 172 9e-37 seq228 100 5e-15 >seq1097 Length=10500 Score = 201 bits (222), Expect = 2e-45 Identities = 328/465 (71%), Gaps = 8/465 (2%) Strand=Plus/Minus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 |||||| | || |||||||| ||| ||||| | ||| | ||||||||| || | Sbjct 5410 CCGTGGGTGGAGAAGTACCGTCCGCGCGTGCTGGCGGACGTGGTGGGCAACCGCGACACG 5351 Query 2018976 GTTGCCTACCTCAAGGCGCTGGCCGCCGACGG-CAACATGCCCAACCTCTTGCTGGCGGG 2019034 | || || ||||| |||| || | ||| ||||||| | || || | ||| |||| Sbjct 5350 ATCGCGAGTCTGCAGGCGATGGC-GCAGGCGGGCAACATGACGAATCTGATCCTGTCGGG 5292 Query 2019035 CCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCT-CTTGGGCG 2019093 ||| || || || ||||| ||||| |||||| ||| ||||| |||| || ||||| | Sbjct 5291 CCCCCCAGGAACAGGCAAAACCACCAGCATCTTGTGTCTGGCACGCGAACTGCTTGGTC- 5233 Query 2019094 CGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCG 2019153 | ||| | |||| ||||| || ||||| ||||| ||||| |||||| | ||| | Sbjct 5232 CTTCCGTGAAACAGGCGGTGCTGGAGCTCAACGCGTCCGACGACCGCGGCATCGACACTG 5173 Query 2019154 TGCGTAGAATCATCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCA 2019211 | || || | |||||| || ||| | || | || ||||| || || ||||| Sbjct 5172 TCCGCAGCAAGATCAAGATGTTCGCGCAGCAGAAGGTGACG--CTGCCCCCAGGACGCCA 5115 Query 2019212 CAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCG 2019271 |||| | | ||||| || || || |||| | | ||| ||||||| |||||||| || || Sbjct 5114 CAAGATCGTGATCCTGGACGAAGCGGACTCCATGACGGCGGCGGCTCAGCAGGCGCTACG 5055 Query 2019272 ATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTC 2019331 | || ||||| | | | | |||||||||||| |||||||||||||||| || | Sbjct 5054 ACGCACGATGGAGATCTTCTCGGCCACGACGCGGTTCGCGCTGGCCTGCAACAATTCCAC 4995 Query 2019332 GATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376 | | | || ||| || ||||||| || |||||||| ||||||| Sbjct 4994 CAAGATTATTGAACCCATCCAGAGTCGCTGCGCCATTCTGCGCTT 4950 >seq130 Length=37012 Score = 188 bits (208), Expect = 1e-41 Identities = 247/337 (73%), Gaps = 15/337 (4%) Strand=Plus/Plus Query 793875 CTCTCCGTCCTCGATGT-GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAA 793933 |||| || || ||| | ||| || ||||||| ||||||||||| ||| |||||| || Sbjct 15193 CTCTTCGGCCGCGACGCCGACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAA 15252 Query 793934 GTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTA 793993 |||||||||||||| |||||||||| |||||||| ||||||||| | | | || Sbjct 15253 GTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT---CTTGACGTT 15309 Query 793994 GTGCTTCTCGCAC---CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTG 794050 || ||| | || || ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 15310 GTAGATCTTGGACACTCCCAGCGAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTG 15369 Query 794051 GCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTC 794110 ||||||||| | | |||||||||||||||| | || || ||||| |||| || ||||| Sbjct 15370 GCACATGAGCCCCGAGTTCATGCCGATGAGCTCGACAGGGAGCGAGTCGCGCACGAACTC 15429 Query 794111 TTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACGTCGG----ACGACGGCT 794166 | ||||||| | || || || | ||||| | ||||| ||| || | ||| Sbjct 15430 GTGCTCGATCACCACAGCGTCACGCACGATCT---CGTGCACG-CGGCTCTCCGGCAGCT 15485 Query 794167 TGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 ||| ||| ||| | | ||| | |||||||| ||||| Sbjct 15486 TGTTGACCAGCTTGGAGTACATGAGGCAGGCGAAGTC 15522 Score = 178 bits (196), Expect = 2e-38 Identities = 236/327 (72%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| | ||||| |||| || || |||||||| || |||||| Sbjct 15533 CCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATGAGACCACGCTTC 15592 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||||| ||||||||| ||||| ||||| || || |||||| Sbjct 15593 TTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCTCCACTGCAGCAAAG 15652 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | ||||| || | | | || || | || | |||||| | |||||| Sbjct 15653 GCCAGCAGCCGTTCCGGGTAGGACGACACGCGCGG---GTCGCACCACTTGAGCGCCCAG 15709 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || ||| || | || | || || ||||| || | |||||| |||||| Sbjct 15710 TTGGCTTTCTTCTGGACACACGGGATAGTCTCAATGGCACGCAGCAGGTGGGTTTTCTCG 15769 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || |||||||| ||| ||||| || || |||||||| ||| ||||||||||| ||| Sbjct 15770 ACAATGTCCTTGATGTACGTGTCAATAAGCAGCGAGTACACCTCCGAGTGGATGTTCTCG 15829 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||||||||||| || |||||| Sbjct 15830 ATGGCGATCTGGAAGCCGTAGAAGCAG 15856 Score = 154 bits (170), Expect = 2e-31 Identities = 200/273 (73%), Gaps = 10/273 (4%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || ||||| ||||| || ||||| ||||| |||||| || || || Sbjct 15860 GCCTCAGGCACTTGCACCTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTGACTATACCA 15919 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| || || ||||| || ||||||||||| ||||| ||||||| ||| |||| Sbjct 15920 TCACTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGG 15979 Query 796270 GAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 ||||||| || | |||| |||| || | ||||||||| ||||| ||||| Sbjct 15980 TTCACCCAGT---CCTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAA 16036 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGGGAACAGAACAA 796384 ||||||||||| |||||||||| ||| | ||| || | | |||||||| || || | Sbjct 16037 GCCTCGGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCCTGAATGGGGAAGAGCACGA 16094 Query 796385 AGCGATTGGGGTTCTCGCGTAGCAGCGGCTCGC 796417 |||| ||||||||||| || | |||||||| Sbjct 16095 AGCGGTTGGGGTTCTCCACGAGGAACGGCTCGC 16127 >seq117 Length=38371 Score = 188 bits (208), Expect = 1e-41 Identities = 197/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| ||||||| || ||| | | Sbjct 20099 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCACCGGGGA 20040 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| ||||||||||||||| || | ||| |||||| || Sbjct 20039 GCATGAGGCGCACGGCCGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAGC 19980 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 19979 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 19920 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||||||| |||||||||||||| |||||||||| Sbjct 19919 TGATCGACATGCCGCGCTTGCTGATGCCCGTCTCGGGGTGCACCTGACGCAGCACCTTGT 19860 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 19859 AGATGTAGGTCGAGTACGA 19841 >seq53 Length=47842 Score = 188 bits (208), Expect = 1e-41 Identities = 197/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || |||||||| || ||||| || ||||||||| ||||||| || ||| | | Sbjct 22432 TGAACTTAGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCACCGGGGA 22373 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| ||||||||||||||| || | ||| |||||| || Sbjct 22372 GCATGAGGCGCACGGCCGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAGC 22313 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| ||||||||||| Sbjct 22312 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAGATGTCGTTGATAAACGAGTTCA 22253 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||||||| |||||||||||||| |||||||||| Sbjct 22252 TGATCGACATGCCGCGCTTGCTGATGCCCGTCTCGGGGTGCACCTGACGCAGCACCTTGT 22193 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 22192 AGATGTAGGTCGAGTACGA 22174 >seq663 Length=23881 Score = 172 bits (190), Expect = 9e-37 Identities = 220/303 (73%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || || |||||||| || || | |||||| | | ||| || Sbjct 22631 GCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGATGCCATT 22690 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 |||| |||||||||||| | |||| | | ||| || | |||||| || Sbjct 22691 GGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGATGTTGTGCATACTAAT 22750 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| || || || ||| |||||||||| || |||| ||||| || ||||| ||||| Sbjct 22751 GCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCGTAAATGCC 22810 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| ||||||||| ||| ||| ||| || |||||||| || ||| || || | ||| Sbjct 22811 CTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGACGTGGCGT 22870 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||| || ||||||||||||||||| || |||| | ||| ||||||||| |||||| Sbjct 22871 GCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCTGGGACATGAGCTCGTA 22930 Query 2073837 GGT 2073839 || Sbjct 22931 CGT 22933 Score = 116 bits (128), Expect = 6e-20 Identities = 333/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| || || ||||||||||||| || || || ||||| ||||||||||| || Sbjct 21239 GTCCACCGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCGT 21298 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCGGG 2069370 |||||| || ||| |||||| |||||| ||||||| | | || ||||| Sbjct 21299 CTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGA--GCTTGCTGATGGTCGGG 21356 Query 2069371 ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCC 2069430 |||| || || |||||||||||| |||||| | |||| | |||||||||| | Sbjct 21357 TCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGCCACGGTCGGCCGAC 21416 Query 2069431 ATGTCGATGG-TCACG-CGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGAT 2069488 | ||| | | || | | | || ||||||||| |||||| || |||||| | Sbjct 21417 AGGTCCAGCACTGACTTCTGCTTGAT--CTCCCACACCGTCTTGTACTTCTCCTTGACGT 21474 Query 2069489 GCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC--CTGCGCTGCGATGAGGCG 2069546 ||| | | | | ||| | |||||| || || | || | || | | Sbjct 21475 TGTCCGGGA--TGGCCTTCACCTT----CTGCACGGAACCACCGTCGTTCAGA--ATCTG 21526 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTT 2069606 | ||||| || |||||||| | ||| | | |||| || | ||||| ||| Sbjct 21527 ATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATCAGCTCCTTCATCAGGTACTTGTT 21586 Query 2069607 GACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTC 2069666 || | || || ||||| | ||||| || || |||| |||||| |||| | ||| Sbjct 21587 AACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTACATGTTGGACGTGTAGGGCTC 21646 Query 2069667 GCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAG 2069726 | | |||| ||||||||| |||||| | || | ||||| |||||| | ||||| || Sbjct 21647 GATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATGGGGGCCACCAG 21706 Query 2069727 CAGCGAGTTGCGCAGGCCGTACT 2069749 |||||||||||| || |||| || Sbjct 21707 CAGCGAGTTGCGAAGACCGTGCT 21729 >seq228 Length=31052 Score = 100 bits (110), Expect = 5e-15 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118805 GGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGA 118864 ||| | |||||| | |||| | || || | || |||| || ||||||||||||||||| Sbjct 11800 GGGGATGTAGCCAATGTGCACTTTACCCGTGAACGGCACCATGTGGTGCTCGCACATGGA 11859 Query 118865 GAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCCCGACGTC-TCGGCAAAGAGGGCGT 118923 | | | ||| || || | ||| | ||||||||| | | ||| || | || | || | Sbjct 11860 GTACAGGTCGATATCTCTGACGATGACCATCTCGTC-GTGGTCCTCTTCGAACACTGCCT 11918 Query 118924 CGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGG 118983 || | | || | |||| || ||| || ||| ||| | || || ||| |||| Sbjct 11919 CGTTCAGCACGTCCGTCAGGCTCTGGCCGTAGCCCTTGGTGTTGTACAGCAAGGCTTTGG 11978 Query 118984 CCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCC 119032 ||| |||||||||||| | || ||| |||||||||| | ||||||||| Sbjct 11979 CCATGCGCATGGGCGTCTTCACGAGCCCCTCGCGCGTCGGGTCCTCGCC 12027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915852707749739