Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq700 95.1 9e-14 >seq700 Length=15699 Score = 95.1 bits (104), Expect = 9e-14 Identities = 332/513 (65%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 282025 || || || ||||| || || |||||| || | || | || ||| ||||||| Sbjct 14144 AAGAATTCGGAACAGAGGTCCTCGAATCGCGCACGGGTGATGGTCGAGTTAAAATCAATG 14085 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTT 282084 || || | || ||||||| || || ||| | || | ||||| || | | || || Sbjct 14084 CCATCTAGCAGCGAATCAATCTCTAT-GTACGCCTGCGCCGAAGTGGACAACGTCCGCTT 14026 Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT----GATTCAAAT 282140 || |||||||| || || | || | || || || |||| || || || || Sbjct 14025 GGCCCGTTCACACGCCGTACGGAGACGGCGCAAAGCAC--GCTGGTTCGCCGA--CATAT 13970 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 | | | ||||| | |||||| || | ||| | | || ||||| || ||||| | Sbjct 13969 CCCTGTGGTATTTGCGCTTGAACTCGGCCACAAAGAACTCGACTAGACGGTTGTCAAAGT 13910 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 ||||||||||||| | |||| || | ||||| | || | ||| | ||| || || | Sbjct 13909 CTTCACCTCCCAAGTGCGTATCACCAGCAGTAGCCTTCACCTCGAAGATTCCTTCCTCGA 13850 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | | || | |||||| ||||| || || | ||| || || | || | | | Sbjct 13849 TCGTAAGCAGCGATACATCAAACGTTCCGCCGCCTAGATCGAAGATCAACACGT---TGT 13793 Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 | | || ||||| || | || || |||| ||||||||| || || || ||||| | Sbjct 13792 GCTCGCCTCCTTTTTTGTCCAAGCCGTAGGCAATAGCAGCAGCGGTCGGCTCGTTAATGA 13733 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 | | || || || | ||||||||| ||| ||||| || || ||||| | || || | Sbjct 13732 TACGCAGCACGTTCAAACCAGCAATGACTCCGGCATCCTTGGTCGCTTGGCGCTGCGAGT 13673 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || ||||| || || || || | || |||| Sbjct 13672 CATTGAAATACGCCGGCACCGTCACCACCGCAT 13640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740448696540426