Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq926 105 7e-18 seq1018 95.1 1e-14 seq427 95.1 1e-14 >seq926 Length=12678 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || | || | ||||| || || || |||||||| ||||| Sbjct 12098 GCCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCT 12039 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| || || || || || || ||||||| || ||||| || || || Sbjct 12038 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11979 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| |||||| || || | | || | || ||| | || || || Sbjct 11978 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 11919 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 11918 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 11871 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| || || || |||||||| ||||||| |||| ||| || || || || || Sbjct 12295 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 12236 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||| || ||||| || || || |||||||| ||||| |||||| || || Sbjct 12235 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTG 12176 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || ||| | || || || || | || | |||||||||||||| || Sbjct 12175 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 12116 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 12115 TTGACGAAGATCTGCAT 12099 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || | || | || || || || || |||||||| ||||| Sbjct 11870 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 11811 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| || || || || || || ||||||| || ||||| || || || Sbjct 11810 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11751 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| |||||| || || | | || | || ||| | || || || Sbjct 11750 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 11691 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 11690 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643 >seq1018 Length=11520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||||||| |||| ||| || || || || || Sbjct 253 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 194 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||| || ||||| || || || |||||||| ||||| ||| || || || Sbjct 193 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTG 134 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || ||| | || || || || | || | |||||||||||||| || Sbjct 133 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 74 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 73 TTCACGAAGATCTGCAT 57 >seq427 Length=22329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||||||| |||| ||| || || || || || Sbjct 31 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 90 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||| || ||||| || || || |||||||| ||||| ||| || || || Sbjct 91 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTG 150 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || ||| | || || || || | || | |||||||||||||| || Sbjct 151 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 210 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 211 TTCACGAAGATCTGCAT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488521398733200